Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30728.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   135   2e-32
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   7.4  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  135 bits (327), Expect = 2e-32
 Identities = 61/83 (73%), Positives = 68/83 (81%)
 Frame = +3

Query: 12  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
           + FRDPYK+KT K   +A E +H
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMH 83



 Score =  117 bits (282), Expect = 7e-27
 Identities = 63/140 (45%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
 Frame = +1

Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
           +TGQF++CG KA +++GN++PVG +PEGT +CN+E K  DR      SG     + H   
Sbjct: 83  HTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPD 142

Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
           T+       S A    Q   ++ + M G +VAGGGR DKP+LKAGR YHKYK KRN WP 
Sbjct: 143 TKKTRIRLPSGAKKVVQ---SVNRAMIG-LVAGGGRTDKPLLKAGRSYHKYKAKRNSWPR 198

Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
                   +    HGGGNHQ
Sbjct: 199 VRGVAMNPV-EHPHGGGNHQ 217



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = +2

Query: 386 LARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRCMVVLL 517
           +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+ L+
Sbjct: 126 IARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLV 169


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 359 KRKXLIXRXLARASGNFAT-VIGHNPDAKRTRVKLPSGAKKVLPSSNRCMVVLLLE 523
           K K +  R   R  G  A   IGH  D +RTR  LP+G KKVL  + + + +LL++
Sbjct: 36  KPKGIDNRVRRRFRGMRAMPTIGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 12  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 122
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 123 HGYIKGVVKDIIHDPGRGAPLAVVHFR 203
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 123 HGYIKGVVKDIIHDPGRGAPLAVVHFR 203
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 60  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 185
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,345,410
Number of Sequences: 27780
Number of extensions: 307245
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)