Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30727.Seq
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.52 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.4  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    21   6.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.4  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 159 RFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIR 64
           R++K VL +SG++   +    T+H+ T+ A R
Sbjct: 268 RWIKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 258 ISKALIAFYQKYVDEASKKEIKDI 329
           I K +IAFY K +   +  EIK I
Sbjct: 126 IVKPIIAFYYKPIKTLNGHEIKFI 149


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 65  RIASVVMECCV*TGAHWT 118
           R+  V M+C      HWT
Sbjct: 179 RLLGVAMDCLKGNAKHWT 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPP 58
           SP  P +  DV+ PPP
Sbjct: 723 SPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPP 58
           SP  P +  DV+ PPP
Sbjct: 615 SPLTPHEAFDVKLPPP 630


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 246 SVNLCYMTTTLDCHSDXNHREF 181
           +V +C+    + CH D   R F
Sbjct: 2   AVAICFALMCIACHPDIQERIF 23


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPPQLRIASV 79
           SP+R     + + P PQ R  SV
Sbjct: 684 SPTRDKSKQNEKSPSPQQRSPSV 706


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,434
Number of Sequences: 336
Number of extensions: 2537
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)