Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30727.Seq
(511 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 133 4e-34
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 140 3e-33
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 140 3e-33
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 140 3e-33
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 140 3e-33
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 82 1e-15
BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology dom... 36 0.082
AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein. 36 0.082
AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens ... 36 0.082
AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein. 36 0.082
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 35 0.14
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 35 0.14
M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation fa... 29 7.1
AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein. 29 7.1
S70458-1|AAB30799.1| 56|Homo sapiens cellular adhesion regulat... 29 9.4
S54769-1|AAB25303.1| 82|Homo sapiens cellular adhesion regulat... 29 9.4
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 133 bits (322), Expect(2) = 4e-34
Identities = 59/81 (72%), Positives = 73/81 (90%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+Y Q
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQ 86
Score = 30.7 bits (66), Expect(2) = 4e-34
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 277 PSTRNM*TKPQRRKSKTS*YNTIGVCW 357
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 140 bits (339), Expect = 3e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 117 bits (281), Expect = 3e-26
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQKSYR 434
+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (339), Expect = 3e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 117 bits (281), Expect = 3e-26
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQKSYR 434
+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (339), Expect = 3e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 117 bits (281), Expect = 3e-26
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQKSYR 434
+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 140 bits (339), Expect = 3e-33
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +1
Query: 13 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 192
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 193 VXIRVTVKGGGHVAQVYAIRQ 255
V IRV VKGGGHVAQ+YAIRQ
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQ 86
Score = 117 bits (281), Expect = 3e-26
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQKSYR 434
+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA PRRCE KKFGGPGARARYQKSYR
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 82.2 bits (194), Expect = 1e-15
Identities = 49/145 (33%), Positives = 68/145 (46%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 196 XIRVTVKGGGHVAQVYAIRQLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLXXXX 375
I V VKG GHV Q+YA+ Q + P + T CWW
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133
Query: 376 XXXXXXXXXXXXXDTRNLTVKPSRK 450
TRN + KP +K
Sbjct: 134 MNPRNLQALVPVLTTRNHSSKPIKK 158
>BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology domain
containing, family M (with RUN domain) member 1 protein.
Length = 1056
Score = 35.9 bits (79), Expect = 0.082
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -2
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 914 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 967
>AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein.
Length = 628
Score = 35.9 bits (79), Expect = 0.082
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -2
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 486 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 539
>AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens B2
gene partial cDNA, clone B2E. ).
Length = 926
Score = 35.9 bits (79), Expect = 0.082
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -2
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 784 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 837
>AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein.
Length = 1058
Score = 35.9 bits (79), Expect = 0.082
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -2
Query: 300 RLHISGRRRSEPLK*LSDSVNLCYMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQ 133
R+H+ GRRR E LK L D + LC + NHR + L E RF LQQ
Sbjct: 916 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 969
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 35.1 bits (77), Expect = 0.14
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTV 213
G++KTA A A K G G ++VNG L P + Q + Q ++ + TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 214 KGGGHVAQVYAIR 252
GGG AQ AIR
Sbjct: 333 SGGGRSAQAGAIR 345
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.14
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTV 213
G++KTA A A K G G ++VNG L P + Q + Q ++ + TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 214 KGGGHVAQVYAIR 252
GGG AQ AIR
Sbjct: 239 SGGGRSAQAGAIR 251
>M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation
factor 1 protein.
Length = 372
Score = 29.5 bits (63), Expect = 7.1
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 327 ILVQYDRSLL--VAXPRR-CEPKKFGGPGARARYQKSYR*AFKKTIGWYR 467
+LV D L +A PRR EP GGPG R ++ Y +F++ +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein.
Length = 372
Score = 29.5 bits (63), Expect = 7.1
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 327 ILVQYDRSLL--VAXPRR-CEPKKFGGPGARARYQKSYR*AFKKTIGWYR 467
+LV D L +A PRR EP GGPG R ++ Y +F++ +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>S70458-1|AAB30799.1| 56|Homo sapiens cellular adhesion regulatory
molecule protein.
Length = 56
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 454 SGGIVAASCCHCDIIGWCK 510
SGG+ A CCH D WCK
Sbjct: 12 SGGLTTAPCCHVD---WCK 27
>S54769-1|AAB25303.1| 82|Homo sapiens cellular adhesion regulatory
molecule protein.
Length = 82
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 454 SGGIVAASCCHCDIIGWCK 510
SGG+ A CCH D WCK
Sbjct: 38 SGGLTTAPCCHVD---WCK 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,298,800
Number of Sequences: 237096
Number of extensions: 1701516
Number of successful extensions: 3976
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3975
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -