Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30727.Seq
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           111   3e-25
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   111   3e-25
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   109   8e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    36   0.016
At1g43570.1 68414.m05001 hypothetical protein                          31   0.34 
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra...    28   3.2  
At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi...    28   4.2  
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra...    28   4.2  
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    27   5.5  
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55...    27   7.3  
At3g24255.1 68416.m03045 expressed protein                             27   7.3  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   9.7  
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s...    27   9.7  

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  111 bits (266), Expect = 3e-25
 Identities = 50/60 (83%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQKSYR 434
           +I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVA PRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score =  109 bits (261), Expect = 1e-24
 Identities = 46/85 (54%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 180
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 181 KFSMVXIRVTVKGGGHVAQVYAIRQ 255
           +F+ V +R+ V GGGH +QVYAIRQ
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQ 86


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  111 bits (266), Expect = 3e-25
 Identities = 50/60 (83%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQKSYR 434
           +I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVA PRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score =  109 bits (262), Expect = 1e-24
 Identities = 47/85 (55%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 180
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 181 KFSMVXIRVTVKGGGHVAQVYAIRQ 255
           +F+ V +R+ V GGGH +QVYAIRQ
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQ 86


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  109 bits (263), Expect = 8e-25
 Identities = 49/60 (81%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQKSYR 434
           +I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVA PRRCE KKFGGPGARAR+QKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146



 Score =  108 bits (259), Expect = 2e-24
 Identities = 45/79 (56%), Positives = 65/79 (82%)
 Frame = +1

Query: 19  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVX 198
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 199 IRVTVKGGGHVAQVYAIRQ 255
           +R+   GGG+ ++VYAIRQ
Sbjct: 68  MRIRATGGGNTSRVYAIRQ 86


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +1

Query: 37  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 216
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +      I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 217 GGGHVAQVYAIR 252
           GGG   QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 376 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 269
           +R  S T + LSYC R+ LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At2g11810.1 68415.m01269 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase type C
           [gi:9927295] from Arabidopsis thaliana, similar to MGDG
           synthase type A [gi:9884651] from Glycine max
          Length = 465

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 169 LGKEKFSMVXIRVTVKGGGHVAQVYAIRQLFQ 264
           +G E+   V I ++  GGGH A   AIR  F+
Sbjct: 67  MGAERIKTVLILMSDTGGGHRASAEAIRDAFK 98


>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 477

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 234 TSLRYQTAISKALIAFYQKYVDEAS-KKEIKDILVQYDRSLLVAXPRRCEPKKF 392
           ++LR+ T +S A   + Q     ++ +KE+    VQ D S +    RRC+P +F
Sbjct: 22  SALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDPNQF 75


>At5g20410.1 68418.m02427 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase [gi:3367638] from
           Arabidopsis thaliana, similar to MGDG synthase type A
           [gi:9884651] from Glycine max
          Length = 468

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 160 ILLLGKEKFSMVXIRVTVKGGGHVAQVYAIRQLFQ 264
           ++ +G E+   V I ++  GGGH A   AIR  F+
Sbjct: 60  LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK 94


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 225  SCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 356
            SC    R+Q  +  AL  F+Q++   AS      IL  Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606


>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 249 QTAISKALIAFYQK--YVDEASKKEIKDIL 332
           ++ +   L+ FY K  Y DE  + EIKDIL
Sbjct: 99  ESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 373 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 269
           R G  T++ LS+  R+ LIS    S T FW  A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 110 HWTWLSPDCCSTNFRNLSFCSARKNSLW 193
           +W W   DC    F +L F    +N  W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149


>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
           similar to exostose-related protein 2, Homo sapiens,
           PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
           [GI:10443633]
          Length = 334

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 216 GWWSCSTSLRYQTAISKALIAFYQKYV 296
           GWWS   S  Y   +SKA   F++KY+
Sbjct: 214 GWWSVWWSGTYSMVLSKAAF-FHKKYL 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,535
Number of Sequences: 28952
Number of extensions: 228819
Number of successful extensions: 662
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)