Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30725.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot...    31   0.73 
At1g58070.1 68414.m06581 expressed protein                             29   3.0  
At3g15600.1 68416.m01976 hypothetical protein low similarity to ...    29   3.9  
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont...    28   5.2  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    28   5.2  
At3g47400.1 68416.m05154 pectinesterase family protein similar t...    27   9.0  
At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S...    27   9.0  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    27   9.0  

>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
           contains Pfam profile PF00439: Bromodomain
          Length = 475

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -1

Query: 170 EDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRD 60
           E K+KR+  L+AALLK++  +  L+S+  +++  S D
Sbjct: 75  ELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESND 111


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 152 IKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHE 39
           +K LEA + +T+T++  L+ R +  E     LN E+H+
Sbjct: 133 LKKLEAEITETKTEVKMLKERESETEVALATLNAELHK 170


>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 591

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 191 RDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
           +DF    E+++KR+K LEAA+   Q   S +++  A   K   D   E+ E  ++  E
Sbjct: 356 KDFSKKYEEQDKRLKLLEAAIKSIQ---SGIRTEDACGSKEIDDKENELEEGSDAETE 410


>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 736

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -1

Query: 179 LAIEDKEKRIKF----LEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESR 24
           +++EDK  R++     LE  L K QT++   + +  ++EK  +DL   I  + E +
Sbjct: 458 ISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEK 513


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 179 LAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPE 30
           +AIED+E R    E A+   Q  L +LQ +     + +R+ +++I E  E
Sbjct: 180 VAIEDEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKE 229


>At3g47400.1 68416.m05154 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Vitis vinifera
           GI:15081598, Lycopersicon esculentum SP|Q43143
           SP|P14280; contains Pfam profile PF01095 pectinesterase
          Length = 594

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 119 QTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLDL 3
           QT LS  Q+   T    S DLN+    +P   N+N+ DL
Sbjct: 192 QTWLSTAQTNIETCRSGSEDLNVSDFVMPVISNKNLSDL 230


>At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|O23627 Glycyl-tRNA
           synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
           {Arabidopsis thaliana}; contains Pfam profile PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T)
          Length = 276

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 163 KKSVLSFWKQHFL 125
           K +VLSFW+QHF+
Sbjct: 33  KSNVLSFWRQHFI 45


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 163 KKSVLSFWKQHFL 125
           K +VLSFW+QHF+
Sbjct: 154 KSNVLSFWRQHFI 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,384,623
Number of Sequences: 28952
Number of extensions: 175565
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)