Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30724.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 287 PEHLSQQIPTHDSSV 243
           P HLS  +PT DS+V
Sbjct: 11  PHHLSPNMPTMDSTV 25


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 437 TSEQHKVFGTGINTDSQIGYHSPREIILW 523
           TS+QHK F   IN  +    +  ++  +W
Sbjct: 123 TSDQHKWFQMSINNTNNNNTNKYKDYYIW 151


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 739 SFGMLXVTHTTFILFIDIYFPTALTI 662
           S  +L   H  F+L ++I  PT+L +
Sbjct: 279 SISILISLHVFFLLVVEIIPPTSLVV 304


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 739 SFGMLXVTHTTFILFIDIYFPTALTI 662
           S  +L   H  F+L ++I  PT+L +
Sbjct: 279 SISILISLHVFFLLVVEIIPPTSLVV 304


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 225 PISKSTDRRVMCGDLLRQVLWVSTSHVA 308
           P+     RRV C  L  Q  W+S +H A
Sbjct: 53  PLLPLRHRRVTCDVLSWQSKWLSINHSA 80


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 90  NFQAYHNQKTNCIYNN 43
           N QA+H+ K+N  +NN
Sbjct: 447 NDQAHHSSKSNNRHNN 462


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 601 RAHTIILTDKEGVYTLGN 654
           R   I LT+K G+  LGN
Sbjct: 330 RGERIQLTEKNGIDVLGN 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,651
Number of Sequences: 438
Number of extensions: 5138
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)