Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30723.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   157   1e-39
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   157   1e-39
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   5.4  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   7.1  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  157 bits (382), Expect = 1e-39
 Identities = 76/118 (64%), Positives = 91/118 (77%)
 Frame = +2

Query: 260 GHSCYXXXRDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH CY   RDGER RK VRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
           KIR+ FNLSKEDDVR++V++R + P+KE     P  +APKIQ LVTP  LQ +RHR A
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK--KPYTKAPKIQRLVTPRTLQHKRHRFA 195



 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 43/78 (55%), Positives = 54/78 (69%)
 Frame = +3

Query: 24  MKLNVSYPATGCQXLFEVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAGXNDKQG 203
           MKLN+SYPA G Q L E+ D+ +LR+F E R   EV  D +G E+ GYV ++ G NDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKXGVLTNSRVRLLMQ 257
           FPM  GVL   RVRLL++
Sbjct: 61  FPMFQGVLLPHRVRLLLR 78


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  157 bits (381), Expect = 1e-39
 Identities = 75/118 (63%), Positives = 91/118 (77%)
 Frame = +2

Query: 260 GHSCYXXXRDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH CY   RDGER RK VRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
           KIR+ FNLSKEDDVR++V++R + P+KE     P  +APKIQ LVTP  LQ +RHR A
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK--KPYTKAPKIQRLVTPRTLQHKRHRFA 195



 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 43/78 (55%), Positives = 54/78 (69%)
 Frame = +3

Query: 24  MKLNVSYPATGCQXLFEVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAGXNDKQG 203
           MKLN+SYPA G Q L E+ D+ +LR+F E R   EV  D +G E+ GYV ++ G NDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKXGVLTNSRVRLLMQ 257
           FPM  GVL   RVRLL++
Sbjct: 61  FPMFQGVLLPHRVRLLLR 78


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 44  PGNGMPXVVRSGGRAQASYLLR 109
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 559 LRCPYVWV*-HXLFLPWLEHAF 497
           L  P+ WV    LF+ WL+HAF
Sbjct: 412 LLAPFFWVIGSELFVDWLKHAF 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,518
Number of Sequences: 5004
Number of extensions: 38605
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)