Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30723.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   130   1e-30
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   128   4e-30
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664...    27   9.7  
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297...    27   9.7  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  130 bits (313), Expect = 1e-30
 Identities = 68/112 (60%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
 Frame = +2

Query: 284 RDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
           RDGER RK VRGCIV  +LSV+ LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL
Sbjct: 90  RDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNL 149

Query: 464 SKEDDVRRYV--VKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
           SK+DDVR+YV   +R    +  K +     +APKIQ LVTP+ LQR+R R+A
Sbjct: 150 SKDDDVRKYVNTYRRTFTTKNGKKV----SKAPKIQRLVTPLTLQRKRARIA 197



 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 43/81 (53%), Positives = 54/81 (66%)
 Frame = +3

Query: 24  MKLNVSYPATGCQXLFEVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAGXNDKQG 203
           MK N++ P TGCQ   E+ D+ KLR F++ R   EV  D LG+E+ GYV ++ G  DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKXGVLTNSRVRLLMQXAT 266
           FPMK GVLT  RVRLL+   T
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGT 81


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  128 bits (309), Expect = 4e-30
 Identities = 67/112 (59%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
 Frame = +2

Query: 284 RDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
           RDGER RK VRGCIV  +LSV+ LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL
Sbjct: 90  RDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNL 149

Query: 464 SKEDDVRRYV--VKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
           +K+DDVR+YV   +R    +  K +     +APKIQ LVTP+ LQR+R R+A
Sbjct: 150 AKDDDVRKYVNTYRRTFTTKNGKKV----SKAPKIQRLVTPLTLQRKRARIA 197



 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 44/81 (54%), Positives = 55/81 (67%)
 Frame = +3

Query: 24  MKLNVSYPATGCQXLFEVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAGXNDKQG 203
           MK N++ P TGCQ   E+ D+ KLR FY+ R   EV  D LG+E+ GYV ++ G  DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKXGVLTNSRVRLLMQXAT 266
           FPMK GVLT+ RVRLL+   T
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGT 81


>07_03_1510 +
           27264999-27265371,27265485-27265546,27265768-27266436,
           27266842-27267288
          Length = 516

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 258 FASEDEHGCLSGRXVSSGILACRCXQRHEVHSPXIHR-LTDQPLLRRXCAFR 106
           FA E EHG +  R +   + A     +   H P I R + +Q +    C  R
Sbjct: 399 FAQELEHGQIKRRFIKRLVDALNANMKQNAHCPGIRRVILEQSIYMMECNSR 450


>01_04_0018 +
           15128174-15128316,15128445-15128544,15129573-15129758,
           15129877-15129924,15130006-15130209,15130476-15130565,
           15130667-15130747,15130827-15130889,15131794-15131832,
           15131914-15132000,15132103-15132252,15132331-15132386,
           15132493-15132775,15132989-15133132,15133233-15133451,
           15133528-15133695,15133868-15133969
          Length = 720

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 541 WV*HXLFLPWLEHAFDDITTYIIFFAKVEQLTDFG 437
           W  H L + WL   FD +  Y +    ++ L D G
Sbjct: 102 WEKHKLMVRWLRRFFDYLDRYYVTRRSLDSLKDLG 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,703
Number of Sequences: 37544
Number of extensions: 289119
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)