Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30723.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              164   5e-41
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   2.5  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   4.3  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      28   5.7  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  164 bits (399), Expect = 5e-41
 Identities = 81/118 (68%), Positives = 92/118 (77%)
 Frame = +2

Query: 260 GHSCYXXXRDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           GHSCY   R GER RK VRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  
Sbjct: 47  GHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVG 106

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
           KIRK+FNLSKEDDVR+YV++R   P  EK       +APKIQ LVTPVVLQR+R RLA
Sbjct: 107 KIRKMFNLSKEDDVRQYVIRR---PLPEKEGKKAKSKAPKIQRLVTPVVLQRKRKRLA 161



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/43 (67%), Positives = 34/43 (79%)
 Frame = +3

Query: 126 EVEADQLGDEWXGYVLRVAGXNDKQGFPMKXGVLTNSRVRLLM 254
           EV  + LGDEW GYV R+ G NDKQGFPMK G++TN RVRLL+
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLL 44


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 296 RXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 451
           R    VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 81  RGSPCVRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 401 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 499
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 EADQLGDEWXGYVL--RVAGXNDKQGFPMK 215
           E D+ G EW G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,921
Number of Sequences: 59808
Number of extensions: 323426
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)