Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30723.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   128   4e-30
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  128 bits (308), Expect = 4e-30
 Identities = 66/117 (56%), Positives = 83/117 (70%)
 Frame = +2

Query: 260 GHSCYXXXRDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           G SCY   ++GER RK VRGCIVDAN+S L+LVIV+KG  EI GLTD  +PR+LGPKRAS
Sbjct: 80  GQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRL 610
           KIRKLFNL+K DDV +YV   +   +     +   I APKIQ L+TP  + R+++ L
Sbjct: 140 KIRKLFNLTKHDDVTKYV---ITHDKTFPDGVTKTI-APKIQRLITPARIARKKYLL 192



 Score =  112 bits (269), Expect = 2e-25
 Identities = 50/78 (64%), Positives = 60/78 (76%)
 Frame = +3

Query: 24  MKLNVSYPATGCQXLFEVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAGXNDKQG 203
           M+LN +YPATG Q  FEV +E KLR+F+E R   EV  D LGDEW GYV+R+ G NDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 204 FPMKXGVLTNSRVRLLMQ 257
           FPMK G+LTN RVRLL++
Sbjct: 61  FPMKQGILTNGRVRLLLK 78


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 347  LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 496
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,072
Number of Sequences: 27780
Number of extensions: 227897
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)