Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30723.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             129   1e-30
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   127   7e-30
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.5  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   6.1  
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P...    27   8.1  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  129 bits (312), Expect = 1e-30
 Identities = 69/112 (61%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
 Frame = +2

Query: 284 RDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
           R GER RK VRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL
Sbjct: 90  RTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNL 149

Query: 464 SKEDDVRRYV--VKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
            KEDDVR+YV   +R    +K K +     +APKIQ LVTP+ LQR+R R+A
Sbjct: 150 GKEDDVRKYVNTYRRTFTNKKGKKV----SKAPKIQRLVTPLTLQRKRARIA 197



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/81 (54%), Positives = 54/81 (66%)
 Frame = +3

Query: 24  MKLNVSYPATGCQXLFEVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAGXNDKQG 203
           MK NV+ P TGCQ   E+ D+ KLR F++ R   EV  D LG+E+ GYV ++ G  DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKXGVLTNSRVRLLMQXAT 266
           FPMK GVLT  RVRLL+   T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  127 bits (306), Expect = 7e-30
 Identities = 69/112 (61%), Positives = 80/112 (71%), Gaps = 2/112 (1%)
 Frame = +2

Query: 284 RDGERXRKXVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
           R GER RK VRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL
Sbjct: 90  RTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNL 149

Query: 464 SKEDDVRRYV--VKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
            KEDDVR YV   +R    +K K +     +APKIQ LVTP+ LQR+R R+A
Sbjct: 150 KKEDDVRTYVNTYRRKFTNKKGKEV----SKAPKIQRLVTPLTLQRKRARIA 197



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/81 (55%), Positives = 54/81 (66%)
 Frame = +3

Query: 24  MKLNVSYPATGCQXLFEVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAGXNDKQG 203
           MK NV+ P TGCQ   E+ D+ KLR FY+ R   EV  D LG+E+ GYV ++ G  DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 204 FPMKXGVLTNSRVRLLMQXAT 266
           FPMK GVLT  RVRLL+   T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +2

Query: 392 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEK 526
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+   +K++
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKE 332


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKL 454
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 661

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 437 SKIRKLFNLSKEDDVRRYVVKRVLQPRKEKXMLNPDIRAPKIQXLVTPVVLQRRRHRLA 613
           S+  +L   S ED+     ++RV   R++   L+PD R       + PV LQ+ +  L+
Sbjct: 407 SEYNRLLPESDEDEEETMRLQRVKAARRKTVKLSPDGRIYDSMAPIDPVKLQKLKDYLS 465


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,852,358
Number of Sequences: 28952
Number of extensions: 215384
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)