Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30722.Seq
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    95   4e-21
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   1.2  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    26   2.8  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.8  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.7  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   6.4  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   8.5  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 95.1 bits (226), Expect = 4e-21
 Identities = 40/63 (63%), Positives = 53/63 (84%)
 Frame = +3

Query: 63  RIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR 242
           ++VTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W +G+R
Sbjct: 11  QVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIR 70

Query: 243 NVP 251
           NVP
Sbjct: 71  NVP 73


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 221 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 99
           E V  S+Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 272 KASHGHEGNISDSLRP-KEFV*ASVYSNVRSSHLFFS 165
           K   G +G+ISD LRP KE V A       S+HL  +
Sbjct: 155 KLRPGSQGDISDVLRPGKEMVAAGYTMYGASAHLLLT 191


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 396 GVYSWLASTFSVCKPLID 343
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 420 FFFFFYTKGVYSWLASTFSVCKPLID 343
           FFF +Y K    ++++ FS+ K L++
Sbjct: 74  FFFVYYCKQALEFISTVFSIIKFLLN 99


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 241 LTPL-DQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 119
           L P+ DQ  L  R+  R SG  +C+S  F   L      + N
Sbjct: 22  LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 341 QQARKSLV*ITYVRNLHHHYVFVKASH 261
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,969
Number of Sequences: 5004
Number of extensions: 30023
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)