Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30722.Seq
         (422 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113508-1|AAM29513.1|  124|Drosophila melanogaster RE59131p pro...   108   3e-24
AE013599-889|AAM71074.1|  124|Drosophila melanogaster CG1821-PC,...   108   3e-24
AE013599-888|AAF58920.1|  124|Drosophila melanogaster CG1821-PB,...   108   3e-24
AE013599-887|AAM71073.1|  124|Drosophila melanogaster CG1821-PA,...   108   3e-24
AY118429-1|AAM48458.1|  163|Drosophila melanogaster RH26504p pro...    28   5.9  
AE014296-3393|AAN12138.1|  163|Drosophila melanogaster CG5104-PB...    28   5.9  

>AY113508-1|AAM29513.1|  124|Drosophila melanogaster RE59131p
           protein.
          Length = 124

 Score =  108 bits (259), Expect = 3e-24
 Identities = 45/63 (71%), Positives = 57/63 (90%)
 Frame = +3

Query: 66  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 245
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 246 VPF 254
            PF
Sbjct: 77  TPF 79



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 30/35 (85%)
 Frame = +2

Query: 284 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 388
           NDDEDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 90  NDDEDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


>AE013599-889|AAM71074.1|  124|Drosophila melanogaster CG1821-PC,
           isoform C protein.
          Length = 124

 Score =  108 bits (259), Expect = 3e-24
 Identities = 45/63 (71%), Positives = 57/63 (90%)
 Frame = +3

Query: 66  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 245
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 246 VPF 254
            PF
Sbjct: 77  TPF 79



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 30/35 (85%)
 Frame = +2

Query: 284 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 388
           NDDEDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 90  NDDEDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


>AE013599-888|AAF58920.1|  124|Drosophila melanogaster CG1821-PB,
           isoform B protein.
          Length = 124

 Score =  108 bits (259), Expect = 3e-24
 Identities = 45/63 (71%), Positives = 57/63 (90%)
 Frame = +3

Query: 66  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 245
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 246 VPF 254
            PF
Sbjct: 77  TPF 79



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 30/35 (85%)
 Frame = +2

Query: 284 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 388
           NDDEDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 90  NDDEDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


>AE013599-887|AAM71073.1|  124|Drosophila melanogaster CG1821-PA,
           isoform A protein.
          Length = 124

 Score =  108 bits (259), Expect = 3e-24
 Identities = 45/63 (71%), Positives = 57/63 (90%)
 Frame = +3

Query: 66  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 245
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 246 VPF 254
            PF
Sbjct: 77  TPF 79



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 30/35 (85%)
 Frame = +2

Query: 284 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 388
           NDDEDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 90  NDDEDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


>AY118429-1|AAM48458.1|  163|Drosophila melanogaster RH26504p
           protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 286 ITSS*KPHTDTKGTFLTPLDQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 119
           + S  +P  + + + +T ++  +     STR+ G  ICF+    +SL+   A FL+
Sbjct: 7   VLSGDEPTPEEESSIITQINDMSTLSW-STRIKGFVICFALGILLSLLGSVALFLH 61


>AE014296-3393|AAN12138.1|  163|Drosophila melanogaster CG5104-PB
           protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 286 ITSS*KPHTDTKGTFLTPLDQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 119
           + S  +P  + + + +T ++  +     STR+ G  ICF+    +SL+   A FL+
Sbjct: 7   VLSGDEPTPEEESSIITQINDMSTLSW-STRIKGFVICFALGILLSLLGSVALFLH 61


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,278
Number of Sequences: 53049
Number of extensions: 320923
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)