Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30718.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 76 1e-14
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 2e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 48 4e-06
10_08_0688 - 19907799-19907978,19908077-19908280,19908387-199087... 29 2.1
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 29 2.1
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 2.7
11_01_0433 - 3323372-3324616,3324708-3324905 28 3.6
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 4.8
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 4.8
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 27 8.4
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 27 8.4
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 27 8.4
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 27 8.4
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 76.2 bits (179), Expect = 1e-14
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 181
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 182 LNYAMDVYELNRRVNSSESIVGWW 253
+ Y ++Y + +VN E IVGW+
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWF 101
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +1
Query: 256 TGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTP 435
TG V+ S++IH++YSR + P+H+T+DT G ++AY+ L + + F
Sbjct: 103 TGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQE 162
Query: 436 VDVTLTCYEPEIVGLQVCQKT 498
+ + L E VG + + T
Sbjct: 163 IPLDLRMLEAGKVGFDILKST 183
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 2e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +2
Query: 8 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 175
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 176 AELNYAMDVYELNRRVNS 229
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 253
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>10_08_0688 -
19907799-19907978,19908077-19908280,19908387-19908722,
19908815-19909102,19909196-19909411,19910985-19911311
Length = 516
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 247 LVGTGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRMGLRAYVCVP 393
+VGT H +H+YY+ CRE H T GR + Y C P
Sbjct: 49 VVGTVFHQLYHVRRLHDYYTALCRE--HTTFRLLATPGRRNI--YTCDP 93
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 224 NSSESIVGWWGLAMK*PTTPLLYTSIIPVXAVSLSMLLWTL 346
N SES K T LL I+PV A++L + LW L
Sbjct: 499 NISESYCAMQADKAKKNTATLLIAVIVPVVAITLMLFLWML 539
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 419 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 321
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 128
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 128
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 99 ARATKEWWK*PTASACHTKN-MPIKSK 176
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVW 146
D++V L+ IH+ I F F ++FVW
Sbjct: 327 DAAVVLMLIHQFITFGFACTPLYFVW 352
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 286 QRSGWLLHCQSPPTNNTFRGIDSSV-QLVNIHR 191
Q G +HC++PP+ N + S+ + ++I R
Sbjct: 427 QDEGTAIHCEAPPSENLLSSVSGSLRRFIDIFR 459
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVW 146
D++V L+ IH+ I F F ++FVW
Sbjct: 337 DAAVVLMLIHQFITFGFACTPLYFVW 362
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 296 SIIPVXAVSLSMLLWTLRWLEVEWVYVHMFVYHWECQMESKVACSL 433
S P VSL ++W + ++E W Y H + + +S+ SL
Sbjct: 627 SQFPYQFVSLFSVIWLISYIENVWTYGHRYRELRSSKQDSRYDSSL 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,401,318
Number of Sequences: 37544
Number of extensions: 339824
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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