Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30718.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    63   1e-10
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    51   5e-07
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    29   2.5  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        29   2.5  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    29   2.5  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    29   2.5  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin monoox...    27   5.7  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    27   5.7  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
 Frame = +2

Query: 2   ISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHA 163
           ++V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P  E  
Sbjct: 5   LTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESN 64

Query: 164 DQVEAELNYAMDVYELNRRVNSSESIVGWW 253
           D +E +  +   +    ++ + +E  VGW+
Sbjct: 65  DDLEIDDQFNQQMISALKKTSPNEQPVGWF 94


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
 Frame = +2

Query: 8   VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 178
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 179 ---ELNYAMDVYELNRRVNSSESIVGWW 253
              +++Y   +Y +  +V + E IVGW+
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWY 128


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 TASACHTKNMPIKSKRNLITRWMFTS 209
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 644


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVGGD 257
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV  D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 119 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 18
           PLL  SCP+ C+ LC        + P F+ K  D
Sbjct: 44  PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 8   VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCF 139
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSF 61


>Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical
           protein K08C7.5 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 RLDRHVLCVARRSSWLLPPLLCRSCP 96
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 RLDRHVLCVARRSSWLLPPLLCRSCP 96
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 381  CLCTIGSAKWKARLHVHSCRCHSH 452
            C CT    +W   +H   CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 27  FYFKLWTHTNVEMQILTELSAPYWARA 107
           FY  +W+ T V  + LT     YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 107 DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYE 208
           D G  EV   +   H EH    +  + Y++DV E
Sbjct: 103 DNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCE 136


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 125 LPPLLCRSCPIRCR*LCENLHFDVRMRPQFEIK 27
           L PLL +SCP+ C  LC +      + P F+ K
Sbjct: 43  LLPLLTQSCPVTCN-LCPSTVSPTTLAPCFDDK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,640
Number of Sequences: 27780
Number of extensions: 288836
Number of successful extensions: 708
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)