Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30718.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 81 5e-16
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 73 8e-14
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 73 1e-13
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 49 2e-06
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.75
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.75
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 28 3.0
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 27 5.3
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 27 5.3
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 27 5.3
At2g28110.1 68415.m03415 exostosin family protein contains 1 tra... 27 7.0
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c... 27 9.3
At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 9.3
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 27 9.3
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 80.6 bits (190), Expect = 5e-16
Identities = 34/85 (40%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 178
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 179 ELNYAMDVYELNRRVNSSESIVGWW 253
+++Y ++ + +VNS E+IVGW+
Sbjct: 86 DIDYHHNMLASHLKVNSKETIVGWY 110
Score = 51.6 bits (118), Expect = 3e-07
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +1
Query: 256 TGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTP 435
TG V SS+IH++Y+R P+H+T+DT G ++A+V L + + + F
Sbjct: 112 TGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQE 171
Query: 436 VDVTLTCYEPEIVGLQVCQKT 498
+ V L + E VG V + T
Sbjct: 172 IPVDLRMVDAERVGFDVLKAT 192
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 73.3 bits (172), Expect = 8e-14
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Frame = +2
Query: 8 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 175
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 176 AELNYAMDVYELNRRVNSSESIVGWWGLAMK 268
+ NY ++ + +R+N+ E +VGW+ K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 72.5 bits (170), Expect = 1e-13
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +2
Query: 8 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 175
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 176 AELNYAMDVYELNRRVNSSESIVGWWGLAMK 268
+ NY ++ + +R+N+ E IVGW+ K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 253
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.75
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 119
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.75
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 119
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 345 FAGWRSNGFTCI-CLCTIGSAKWKARL 422
FAG+RS + CLC +G A W RL
Sbjct: 332 FAGYRSEIVRSVFCLCPLGWAPWSPRL 358
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSESIVGWWGLAMK*---PTTPLL--YTSIIPVXAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++PV AVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSESIVGWWGLAMK*---PTTPLL--YTSIIPVXAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++PV AVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSESIVGWWGLAMK*---PTTPLL--YTSIIPVXAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++PV AVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At2g28110.1 68415.m03415 exostosin family protein contains 1
transmembrane domain; similar to
pectin-glucuronyltransferase (GI:23821292) [Nicotiana
plumbaginifolia]; similar to NpGUT1 homolog
(GI:23821294) [Arabidopsis thaliana]; contains Pfam
profile PF03016: Exostosin family
Length = 448
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 345 FAGWRSN-GFTCICLCTIGSAKWKARL 422
FAG++S + CLC +G A W RL
Sbjct: 318 FAGYQSEIARSVFCLCPLGWAPWSPRL 344
>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 557
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 81 LSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRW 197
L+ P+W T+ WW A+A P + +L W
Sbjct: 215 LAPPWWPNGTELWWGEQGAAAFEHGPPPYRKPHDLRKAW 253
>At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Mus musculus [SP|Q60715], Homo sapiens
[GI:18073925]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 272
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 278 TPLLYTSIIPVXAVSLSMLLWTLRWLEVEWVYVHMFVYH 394
+PLL T + V+ S+ RWLEV FVYH
Sbjct: 63 SPLLTTLTCSMVKVAASLRFPNERWLEVITKEPRAFVYH 101
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVW 146
D++V L+ IH+ I F F ++FVW
Sbjct: 312 DAAVILMLIHQFITFGFACTPLYFVW 337
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,484
Number of Sequences: 28952
Number of extensions: 265534
Number of successful extensions: 670
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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