Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30716.Seq
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         32   0.56 
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    32   0.56 
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           31   0.97 
02_01_0410 + 2996779-2997888                                           29   5.2  
09_06_0319 - 22293869-22293906,22294539-22295808                       28   6.9  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 304 LHVTMFYGLYLCCTTA-KWPFSWIRVPVLCSSNDWRYSWSSQTVV 435
           +HV M YG YLCC+   +WP  W R         + +S+++  V+
Sbjct: 182 VHVAM-YGYYLCCSLGLRWPPRWKRAVTELQIAQFLFSFAASAVM 225


>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 539 WTLWSRTQWVVFDWPVKERPLVGFEEV 459
           WTLW+ +Q VV  W +K RP     E+
Sbjct: 147 WTLWTHSQLVVVGWLLKRRPPTKLSEL 173


>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 326 AYIFVVRQRSGPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLM 481
           AY + V   +  S+ F Y+ +V  TIG+      L+++       PL++LLM
Sbjct: 200 AYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLM 251


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 326 AYIFVVRQRSGPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILL 478
           AY + V   +  S+ F Y+ +V  TIG+      L+++       PL++LL
Sbjct: 183 AYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLL 233


>09_06_0319 - 22293869-22293906,22294539-22295808
          Length = 435

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 112 AWSTAPISGPGLXNTSFFHLTLKIMS 35
           AW+  PIS  GL +TSF H+  K ++
Sbjct: 185 AWTCHPISLHGLVDTSFTHINTKAIT 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,420,960
Number of Sequences: 37544
Number of extensions: 424222
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)