Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30716.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               77   2e-14
SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)                   30   2.3  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_23017| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.014)           29   5.3  
SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17)          28   9.2  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     28   9.2  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = +2

Query: 404 GVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITSTAIRTQIHITQA 583
           GVT GAHRLW+H+++KA+ PL++++M+  S+A Q     +     +      T      A
Sbjct: 19  GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNA 78

Query: 584 V-AFFYSHIGWLFVRKHPEVKKKGKTNRLSGFVR*SCINVSAQVFENI 724
              FF+SH+GWL  RKHP+V +KGK   LS     S +    + ++ I
Sbjct: 79  KRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVMFQRRHYKKI 126



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 26/49 (53%), Positives = 32/49 (65%)
 Frame = +1

Query: 487 SFTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGFLLFSYRLVVRQKTP 633
           S   Q+    W RDHRVHHKYS+TDADPHNA RGF       ++++K P
Sbjct: 48  SMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSHVGWLMQRKHP 96



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 645 RKEKLIDFPDLFDNPALMFQHRYSKTFIPIVC 740
           RK K ID  DL+ +  +MFQ R+ K    ++C
Sbjct: 100 RKGKGIDLSDLYADSVVMFQRRHYKKISMLMC 131


>SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)
          Length = 997

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +3

Query: 639 LRRKEKLIDFPDLF 680
           LRRK++L+DFPDLF
Sbjct: 27  LRRKDRLLDFPDLF 40


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 539  WTLWSRTQWVVFDWPVKERPLVGFEEVILLCMICGTTVCELQL 411
            W+LWSR+ W    WP    P   +   + L ++CG  +C L L
Sbjct: 1648 WSLWSRSMWPRSLWPRSLWPRSLWRWSLCL-VLCGLGLCCLGL 1689


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 460  TSSNPTNGLSFTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGFLLFSYRLVVRQKTP 633
            TSS  T+GLS   +S      ++ +VH    D+D+D    ++    FS + V R K P
Sbjct: 923  TSSVETSGLSVDRKSNRMQGQKELKVHTASDDSDSD-FTENKSLTPFSAKEVNRGKKP 979


>SB_23017| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.014)
          Length = 234

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 458 LPLQILLMVFLSLANQRPPIGFETIESITSTAIRTQIHITQAVAFFYSHIGW---LFVRK 628
           + +Q  L V+       P + FE   ++    I  +++IT A AFF    GW   +F  +
Sbjct: 162 IDIQAGLFVWADFREIMPSLTFEEELALFEKFIEHKVYITPAQAFFCDGTGWFRLVFATE 221

Query: 629 HPEVK 643
             E+K
Sbjct: 222 SEELK 226


>SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17)
          Length = 409

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 412 SWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRDHRVHHKYSD 555
           SW S T     +Q  + S     G++  G     +WV+ ++V H + +
Sbjct: 39  SWCSVTSSSGYLQVDLGSRKTVTGIATHGDHTRDNWVKKYKVLHSHDN 86


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 524 RTQWVVFDW---PVKERPLVGFEEVILLCMIC 438
           RT+W++FD+   P++ +  V F  V  +C +C
Sbjct: 484 RTRWIIFDFEAMPLESKHTVNFAGVQKVCDVC 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,252,594
Number of Sequences: 59808
Number of extensions: 512244
Number of successful extensions: 1136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)