Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30712.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    67   2e-12
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.6  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   4.5  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   4.5  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    26   6.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.0  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +3

Query: 516 WVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRXHP 632
           W RDHR HH+Y+DTD DP+N  +GF+Y+H+GW+ +  +P
Sbjct: 143 WSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP 181



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
 Frame = +1

Query: 280 KNIFIHI-YLHVTMFYGLYLCC------TTAKWPSVGFAYLCYVAATIGVTAGAHRLWSH 438
           +N + H+ +LH  + +GL +        T  +  ++ FA + Y  + +G+TAG HRLWSH
Sbjct: 56  QNWWRHLNWLHCMLIFGLPMIAIYGVFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSH 115

Query: 439 KSYKARLPLQILL 477
           ++YKA+ PL+  L
Sbjct: 116 RAYKAKKPLEYFL 128


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 376 YLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRAPIGFETIESITSTAI 555
           +LCY      +     +  +   + ++L   ++ +VFLSL N   P  F  + S  S A+
Sbjct: 582 FLCYDILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNS-GPFIFRAL-SKKSLAV 639

Query: 556 RTQIHIT 576
            T + IT
Sbjct: 640 LTMLWIT 646


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 486 SFTGQSKSTHWVRDHRVHHKYS 551
           SF  Q++S  W+ D R+H KY+
Sbjct: 16  SFEEQTESVSWIIDLRLHSKYA 37


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 238 QTFSGRPREYEIVYKNIF--IHIYLHVTMFYGLYLCCTTAKWPSVGFAYLCYVAATIG 405
           Q ++ +P    IV KN +  I +Y+   + YG Y C       +  F  + Y  A +G
Sbjct: 511 QLYTPKPVVANIVPKNAYGNIDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAKAVVG 568


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 YEIVYKNIFIHIYLHVTMFYGLYLC 339
           YE+ YK IFI   L+  ++  LY+C
Sbjct: 66  YEVPYKWIFIIEMLYYELYLTLYVC 90


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +1

Query: 277 YKNIFIHIYLHVTMFYGLYLCCTTAKWPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKAR 456
           Y N+ IH+  HV  F   +L       P +    +  +A  I       +LW+HK++K+ 
Sbjct: 188 YFNVVIHMLAHVKPFRNYFLLKNFDNCPQL----VQRLAILI------RKLWNHKAFKSH 237

Query: 457 LPLQILLMVFLSLANQRAPI 516
           +  Q L+     L++++  I
Sbjct: 238 VSPQELIQEVTVLSHKKYSI 257


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 LLYDSEVAFSWIRVPVLCSS 395
           ++YDS  +F W+RV VL  S
Sbjct: 63  VMYDSPFSFIWVRVDVLVFS 82


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +3

Query: 306 TRYNVLWPISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGL 485
           T  N     S+LY S    S    P   SS+  + SW+S T +     SK+TSS  +  L
Sbjct: 587 TTTNCTTSTSVLYTSTPITS----PNSTSSSSTQVSWNSTTPITGTSTSKVTSST-SIPL 641

Query: 486 SFTGQSKST 512
           + T ++ +T
Sbjct: 642 TSTNRTSTT 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,010
Number of Sequences: 5004
Number of extensions: 64044
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)