Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30712.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    31   1.2  
10_05_0050 + 8565612-8566523                                           29   3.5  
08_02_1043 + 23906340-23906412,23906525-23906631,23906727-239068...    29   3.5  

>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 538 WTLWSRTQWVLFDWPVKERPLVGFEEV 458
           WTLW+ +Q V+  W +K RP     E+
Sbjct: 147 WTLWTHSQLVVVGWLLKRRPPTKLSEL 173


>10_05_0050 + 8565612-8566523
          Length = 303

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 463 LQILLMVFLSLANQRAPIGFETIESITSTAIRT 561
           +++LL+VFL LA   A      +ESITSTA++T
Sbjct: 1   MELLLLVFLLLAAMSA-----AVESITSTAVKT 28


>08_02_1043 +
           23906340-23906412,23906525-23906631,23906727-23906846,
           23907174-23907353,23907508-23907666,23907751-23907920,
           23907971-23908165,23908536-23908888,23909047-23909223,
           23910402-23910466
          Length = 532

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 306 TRYNVLWPISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQ 425
           T Y +     L    E +F W    V C+S  W Y W+ +
Sbjct: 467 TEYQLFGKAQLEVYGEASFGWSYWTVRCNSVHWDYEWNKR 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,568,198
Number of Sequences: 37544
Number of extensions: 384993
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)