Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30712.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0) 91 6e-19
SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_46957| Best HMM Match : fn3 (HMM E-Value=3.8) 30 2.1
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_43794| Best HMM Match : zf-B_box (HMM E-Value=6) 29 3.6
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38) 29 4.8
SB_37799| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17) 28 8.4
SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
Length = 268
Score = 91.5 bits (217), Expect = 6e-19
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +3
Query: 486 SFTGQSKSTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRXHPEVKKKG 650
S Q+ W RDHRVHHKYS+TDADPHNA RGFF+SH+GWL R HP+V +KG
Sbjct: 48 SMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSHVGWLMQRKHPDVIRKG 102
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +1
Query: 403 GVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRAPIGFETIESITSTAIRTQIHITQA 582
GVT GAHRLW+H+++KA+ PL++++M+ S+A Q + + T A
Sbjct: 19 GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNA 78
Query: 583 VASFILI*VG-CSSXNTLKLRRKGKLIDLSDLFDXPALM 696
F VG + RKGK IDLSDL+ +M
Sbjct: 79 KRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVM 117
>SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 306 TRYNVLWPISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVVP--QIIQSKITSSNPTN 479
+ Y L PIS + D +V S + + D R S T +P I+ K+T+ N
Sbjct: 659 SHYTTL-PISGILDPKVRESHYTTLPISGNLDTRVGESHYTALPISGILDPKLTAPNTGL 717
Query: 480 GLSFTGQSKSTHWVRDHR 533
S T S++ + RDHR
Sbjct: 718 TYSTTKNSRNEIYFRDHR 735
>SB_46957| Best HMM Match : fn3 (HMM E-Value=3.8)
Length = 123
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
+ Y V W + ++ DSE W +PV+ S +++ W++ TV+
Sbjct: 18 SEYTVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLTVM 60
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
+ Y V W + ++ DSE W +PV+ S +++ W++ TV+
Sbjct: 63 SEYTVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLTVM 105
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
+ Y V W ++++ DSE W +PV+ S +++ W++ V+
Sbjct: 48 SEYTVQWTTLTVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLPVM 90
>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
+ YNV W + ++ DSE W +PV+ S +++ W++ V+
Sbjct: 571 SEYNVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTLQWTTLPVM 613
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
+ Y V W + ++ DSE W +PV+ S +++ W++ TV+
Sbjct: 661 SEYTVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTVQWTTLTVM 703
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
+ Y V W + ++ DSE W +PV+ S +++ W++ V+
Sbjct: 586 SEYTVQWTTLPVMSDSEYTLQWTTLPVM-SDSEYTVQWTTLPVM 628
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 TRYNVLWP-ISLLYDSEVAFSWIRVPVLCSSNDWRYSWSSQTVV 434
+ Y V W + ++ DSE W +PV+ S +++ W++ V+
Sbjct: 616 SEYTVQWTTLPVMSDSEYTVQWTTLPVM-SDSEYTVQWTTPPVM 658
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 538 WTLWSRTQWVLFDWPVKERPLVGFEEVILLCMICGTTVCELQL 410
W+LWSR+ W WP P + + L ++CG +C L L
Sbjct: 1648 WSLWSRSMWPRSLWPRSLWPRSLWRWSLCL-VLCGLGLCCLGL 1689
>SB_43794| Best HMM Match : zf-B_box (HMM E-Value=6)
Length = 320
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Frame = +3
Query: 330 ISLLYDSEVAFSWIRV-----PVLCSSNDWRYSWSSQTVVPQIIQSKIT--------SSN 470
+ LL + ++SW V + + R +W+ TV+ Q T S
Sbjct: 187 LQLLMEKAASYSWSSVRNFHFSISSALEAGRLTWNDATVIRDRAQIAFTHADLRSASQSA 246
Query: 471 PTNGLSFTGQSKSTHWVRDHRVHHKYSDTDADP 569
P NG+S+ ++K + +D K+S DP
Sbjct: 247 PRNGISYAAKAKKELYCKDWNHTGKFSCPSTDP 279
>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
Length = 1172
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 372 ESN*RPLRCRTTKI*AIKHCNV*INMYEYIFIDDFIFSRSTTEGLTLSCSRLE 214
+SN RC T + I+ N+ N ++ +DDF+F TT T CS E
Sbjct: 1032 QSNGEVERCNRTILKVIRIANLQGNDWKKA-LDDFLFQYRTTNHATTGCSPAE 1083
>SB_37799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 605 YMRIKEATACVMWICVRIAVLVMDS 531
Y R+++A CV CVR VL DS
Sbjct: 30 YFRLEDAKRCVQPACVRHGVLTRDS 54
>SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17)
Length = 409
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 411 SWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKSTHWVRDHRVHHKYSD 554
SW S T +Q + S G++ G +WV+ ++V H + +
Sbjct: 39 SWCSVTSSSGYLQVDLGSRKTVTGIATHGDHTRDNWVKKYKVLHSHDN 86
>SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 460 PLQILLMVFLSLANQRAPIGFETIESITSTAIRTQIHITQAVASFILI*VGCSSXNTLKL 639
PL+++L LS N P+G I + AI I I A+A I I + ++ T+ +
Sbjct: 58 PLRVILKPLLSDYNDYNPVGGVAIAIAIAIAIAIAIAIAIAIAIAIAIAIAIANSITISI 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,794
Number of Sequences: 59808
Number of extensions: 462368
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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