Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30710.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n...    32   6.2  
UniRef50_Q6YPI6 Cluster: Putative uncharacterized protein; n=2; ...    32   8.2  

>UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: Rab GTPase
           activating protein - Entamoeba histolytica HM-1:IMSS
          Length = 604

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = -3

Query: 194 PLNFINLVLLQLNIMVGKLLTHSFTSYLMKVLISSINYY 78
           P+ F+N  +  LNI++ K +T++F SY   + +++++ +
Sbjct: 136 PIQFVNKEVGLLNILINKTMTNNFDSYKYSICLTNLSSF 174


>UniRef50_Q6YPI6 Cluster: Putative uncharacterized protein; n=2;
           Candidatus Phytoplasma asteris|Rep: Putative
           uncharacterized protein - Onion yellows phytoplasma
          Length = 209

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -3

Query: 233 VDIVFLXTRNLLTPLNFINLVLLQL-NIMVGKLLTHSFTSYLMKVLISSIN 84
           V +  + T  LL  L F+N+  L+  N +VGKLLT ++   LM VL S IN
Sbjct: 81  VFVFVIVTAFLLPGLGFLNIDDLKTKNPLVGKLLTFNYCLSLMFVLHSFIN 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,089,810
Number of Sequences: 1657284
Number of extensions: 6587801
Number of successful extensions: 17808
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17781
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)