Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30710.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    29   2.1  
05_01_0096 + 654074-654499,654673-655326                               29   2.7  
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540...    28   3.6  
12_01_0686 - 5855216-5858263                                           27   6.3  

>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 367 GAGREPRCPRGMTAATSSTG 426
           G GR+ RCP G+ AA S +G
Sbjct: 824 GGGRKERCPTGLPAACSGSG 843


>05_01_0096 + 654074-654499,654673-655326
          Length = 359

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +1

Query: 178 LIKLRGVSRFRVXRNTISTSCQSTLNGARQRKDYIFILYDYLYHARGGSHAFK*XL*LNV 357
           LI+ R +S  R   + +  SC STL+    R   + + Y Y+    GG+      + L +
Sbjct: 189 LIEFRSLSMPRGVEDVVVGSC-STLDS---RLSTVELSYAYI----GGAVEAAVDVTLRL 240

Query: 358 NKT-GAGREPRCPRGMTAATSSTGSIETFHHYNSSKTKXTT 477
               GAGR  RC  G   A SS+    +   Y+SSK   T+
Sbjct: 241 PAAAGAGRHRRCFHGQITACSSSIPDASIVLYDSSKVNATS 281


>01_05_0636 +
           23852985-23853142,23853253-23853445,23853910-23854033,
           23854285-23854637,23855525-23856530,23856892-23857085,
           23857238-23857324
          Length = 704

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
 Frame = +1

Query: 145 PTIIFNCNKTKLIKLRGVSRFRVXRNTISTSCQSTLNGA-RQRKDYI---FILYDYLYHA 312
           P  +     TK  +    S      NTIST   +T NGA  QR++ +     L     H 
Sbjct: 462 PVTLHASGLTKHKRSMDESHMLEGNNTISTDAGTTTNGADHQRENSVNGTSNLVANPEHQ 521

Query: 313 RGGSHAFK*XL*LNVNKTGAGREPRCPRGMTAATSSTGSIETFHHYNSSKT 465
           +GGSH+        V  TG         G  A  S T + E   H +  K+
Sbjct: 522 QGGSHSDT----SRVTSTGEVSNEESETGHAAIKSHTSTDELGQHGSDPKS 568


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 200  LTPLNFINLVLLQLNIMVGKL-LTHSFTSYLMKVLISSINYYTPTLQNVC 54
            L  LNF++ + L  N++VG++  ++ F+++     + +I    P L   C
Sbjct: 917  LASLNFLSTLNLSYNMLVGRIPNSYQFSTFSNNSFLGNIGLCGPPLSKQC 966


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,613
Number of Sequences: 37544
Number of extensions: 182272
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)