Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30710.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25576| Best HMM Match : WD40 (HMM E-Value=1.6e-30)                  32   0.30 
SB_9844| Best HMM Match : Metallothionein (HMM E-Value=7.6)            31   0.70 
SB_50647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_45944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_25576| Best HMM Match : WD40 (HMM E-Value=1.6e-30)
          Length = 326

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 464 VLEEL*WWNVSIEPVEDVAAVIPRGHRGSRPAPVLLTLSYXIYLKAWE 321
           V+E+L W   S  PV + AA +  G +   P P L++ S    +K W+
Sbjct: 175 VIEDLNWAPESATPVINEAAGVEGGKKAMSPGPFLVSASRDKSIKIWD 222


>SB_9844| Best HMM Match : Metallothionein (HMM E-Value=7.6)
          Length = 108

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 184 KLRGVSRFRVXRNTISTSCQSTLNGARQRKD 276
           K R  +R  V +NT +++CQST+N A Q  D
Sbjct: 53  KARVKARLTVCKNTDNSTCQSTVNSACQNTD 83


>SB_50647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 236 LVDIVFLXTRNLLTPLNF--INLVLLQLNIMVGKLLTHSF 123
           LV IV L +R+L TP+NF  +NL +  + + +     H F
Sbjct: 26  LVVIVVLRSRSLRTPMNFLLVNLAIADMMVAIFMSPRHIF 65


>SB_45944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/58 (20%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 227 IVFLXTRNLLTPLNFINLVLLQLNIMVG-KLLTHSFTSYLMKVLISSINYYTPTLQNV 57
           I+ +    ++T +  + ++++ + +M+  K++T      +MK++++    Y PTL N+
Sbjct: 55  IMLMIMMMMMTMMKMMMMMMMMMMMMMKRKMMTTLLMMKIMKMMMAMSMMYEPTLYNI 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,326,290
Number of Sequences: 59808
Number of extensions: 207695
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)