Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30710.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.77 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 290 STTTSITLXAAPTPSNKXYNSTSTKPXP 373
           +TTT+ T     T  N   N+++T P P
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASATTPPP 691


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 432 DRTGRGRGRRH 400
           DR GRGR R H
Sbjct: 317 DRRGRGRSREH 327


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 432 DRTGRGRGRRH 400
           + TGRG+GR H
Sbjct: 76  EETGRGKGRGH 86


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 194 PLNFINLVLLQ 162
           P+N INL+LLQ
Sbjct: 76  PVNNINLILLQ 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,749
Number of Sequences: 438
Number of extensions: 2237
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)