Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30708.Seq
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.0  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   6.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   6.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    20   8.8  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 220 SIPSFCCLGQSPVLALISD 164
           SIP+F CL  S  L L+ +
Sbjct: 216 SIPAFTCLPLSDQLLLLEE 234


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 220 SIPSFCCLGQSPVLALISD 164
           SIP+F CL  S  L L+ +
Sbjct: 216 SIPAFTCLPLSDQLLLLEE 234


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 67  ETVKMISVK*IPLNKRI 117
           E VKM+ ++ + LNK+I
Sbjct: 459 ELVKMLKIRFVILNKQI 475


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 67  ETVKMISVK*IPLNKRI 117
           E VKM+ ++ + LNK+I
Sbjct: 184 ELVKMLKIRFVILNKQI 200


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 168 DIRARTGLCPKQQKDGIE 221
           DIRA     P+QQ DG E
Sbjct: 90  DIRAAGYYGPQQQMDGQE 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,409
Number of Sequences: 336
Number of extensions: 1989
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)