Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30708.Seq
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108... 31 0.40
04_03_0923 + 20843477-20845044,20846081-20846996 31 0.53
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 29 2.1
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415... 28 2.8
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 28 3.7
04_03_0914 + 20788103-20789642,20790036-20790529 27 4.9
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 27 4.9
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 27 6.5
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 27 8.6
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254... 27 8.6
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 27 8.6
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 27 8.6
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 27 8.6
>07_03_0831 -
21810002-21810319,21810423-21810573,21810660-21810897,
21811011-21811221,21811336-21811559,21811696-21811806,
21813265-21813636,21813810-21814782
Length = 865
Score = 31.1 bits (67), Expect = 0.40
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 236 HSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTFPAARILL 108
H++T D L++ ++G+D+ W H T T P I L
Sbjct: 129 HTLTIRDDGNLVISGSDAAGTDVEWESFHHPTDTFVPGMEIAL 171
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 30.7 bits (66), Expect = 0.53
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = -1
Query: 275 ILRRASDSGLFYGHS-VTAFDSVFLLLRT------ESSSGSDIRWTVLSHSTQTTFPAAR 117
IL A+ S ++ H+ +TA D++ +LL SS+ S I W + T T FP+A+
Sbjct: 108 ILDHATKSIIWSTHANITAKDTIAILLNNGNLVLRSSSNSSIIFWQSFDYPTDTLFPSAK 167
Query: 116 I 114
I
Sbjct: 168 I 168
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 234 VSVKETRVGSTAENVSRKATAVNL*YMKKLQTVPKN 341
V++ ET+ S +EN S K+ ++ Y++ L++ P N
Sbjct: 87 VAISETKKNSASENSSEKSDGGHVKYLEVLESSPDN 122
>04_03_0772 -
19438910-19439209,19439692-19439828,19441334-19441570,
19441948-19442149,19442761-19442858,19443082-19443665,
19443725-19443882
Length = 571
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 45 AMCILVYGNSEDDFCEIDSIEQEDPC 122
A C+ V G S DD CE ++ +D C
Sbjct: 83 AACLGVIGGSGDDLCEKAAVRYDDRC 108
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 220 SIPSFCCLGQSPVLALISDGQSSATVHKPPSLRHGS 113
++PS CCL SP S VHKPP R GS
Sbjct: 125 AVPSGCCLSSSP--------GSVIWVHKPPEGRRGS 152
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 203 LLRTESSSGSDIRWTVLSHSTQTTFPAARI 114
L+ T S+ S++ W + T T FP A++
Sbjct: 136 LILTNPSNSSEVLWQSFDYPTDTLFPRAKL 165
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.5 bits (58), Expect = 4.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 147 VAEDCPSDIRART-GL-CPKQQKDGIECCYGVSVKETRVGSTAENVSRKATAVNL*YMKK 320
VAED ++I R GL KQ + CC V V + R+ + + K + L KK
Sbjct: 1173 VAEDNMTNICFRKEGLHWSKQPRTVQACCKEVLVADIRLANRHAGIVDKEFHIPLFCEKK 1232
Query: 321 LQTVPKNDCCI 353
+Q P++ C I
Sbjct: 1233 IQIPPESACFI 1243
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 99 SIEQEDPCRREGGLCTVAEDCPSD 170
S+E+ED C R GG VA DC D
Sbjct: 439 SMEKEDGCSRVGG--AVASDCVED 460
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 181 LALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP 65
LA I+D Q T+ +P + HG+S + +FP
Sbjct: 89 LAAIADTQPQTTISRPQMVPHGASPGLGGQYMSQVPMFP 127
>12_01_0329 +
2545511-2546683,2546983-2546993,2547377-2547438,
2547882-2548225
Length = 529
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 90 EIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKE 248
EI E P LC + C + AR DG++CCY V++ +
Sbjct: 444 EISLYENATPDASFSWLCHDDDLCAAHCNARR-THTSSHTDGVQCCYKVNMSD 495
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 39 FCAMCILVYGN-SEDDFCEIDSIEQE 113
FC + +L G DD CE++SI+ E
Sbjct: 565 FCCLKLLASGKLGNDDLCEVNSIDVE 590
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 81 DFCEIDSIEQEDPCRREGG--LCTVAEDCPSDIRARTGLC 194
D C + D C+ GG CT C R R+GLC
Sbjct: 562 DNCSKSAQGSTDFCKAHGGGKRCTWGTGCEKFARGRSGLC 601
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 26.6 bits (56), Expect = 8.6
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -1
Query: 323 KLLHISKID-CSSLSRNILRRASDSGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSH 147
K++ + K+D CSSLS R S + F + + D V LL TES + + + +H
Sbjct: 34 KIVVLDKLDYCSSLSNLNPSRPSPNFKFVKGDIASADLVNYLLTTESID-TIMHFAAQTH 92
Query: 146 STQTTFPAARILLFNGIYFTEII 78
+F + N IY T ++
Sbjct: 93 -VDNSFGNSFEFTKNNIYGTHVL 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,640,958
Number of Sequences: 37544
Number of extensions: 221225
Number of successful extensions: 733
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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