Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30708.Seq
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical ... 31 0.36
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 31 0.47
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 0.47
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 0.47
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical pr... 29 1.4
AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical ... 29 1.4
Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical p... 28 2.5
AL132872-3|CAB60759.1| 103|Caenorhabditis elegans Hypothetical ... 28 3.3
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 27 4.4
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 27 4.4
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical p... 27 7.7
Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical pr... 27 7.7
U58751-9|AAB00660.1| 133|Caenorhabditis elegans Hypothetical pr... 27 7.7
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 27 7.7
AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical... 27 7.7
>AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical
protein Y17D7C.1 protein.
Length = 241
Score = 31.1 bits (67), Expect = 0.36
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 9 SEHVIMKFLLFCAMCILVYGN 71
S+H+ FLLFC C +VYG+
Sbjct: 88 SQHICRHFLLFCLQCRVVYGD 108
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 30.7 bits (66), Expect = 0.47
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 263 ASDSGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTF--PAAR-ILLFNGIY 93
A+D+ LFY V D LL SS G + +W + T ++ P +R I G+
Sbjct: 53 ANDAALFYLECVCHADETERLLNRGSSVGKEKKWKKVKRKTSSSVAPPLSRTISSLPGVS 112
Query: 92 FTEIIFTVSVN 60
++I T+ V+
Sbjct: 113 SPDVIQTIDVS 123
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.47
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 153 EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKETRVGSTAE 272
++CP ++A G CPK KDG CY + ET G +E
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDIDECETNNGQCSE 13001
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.47
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 153 EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKETRVGSTAE 272
++CP ++A G CPK KDG CY + ET G +E
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDIDECETNNGQCSE 13001
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +3
Query: 87 CEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIEC 224
CE E P + GG C C S+ GLC + K G C
Sbjct: 1196 CEDAKCECRPPLKAVGGFCQEEIQCSSNQVLHNGLCHNKAKLGEAC 1241
>Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical
protein C33D9.3b protein.
Length = 351
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -2
Query: 190 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMMTC 14
SP ++ SD S V P SS S +S S KSS L T++ ++ N+N C
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNTYSDC 113
>Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical
protein C33D9.3a protein.
Length = 354
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -2
Query: 190 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMMTCS 11
SP ++ SD S V P SS S +S S KSS L T++ ++ N+N T S
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNVSKTYS 114
>AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical
protein F35B3.4 protein.
Length = 227
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 159 CPSDIRARTGLCPKQQKDGIECCYGVSVKETRVGS 263
CP A C Q +D +CCY SV T G+
Sbjct: 113 CPMQAAADIQYCAAQGQDHTDCCYRNSVGTTLAGN 147
>Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical
protein T20G5.12 protein.
Length = 216
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +3
Query: 150 AEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRVGS 263
+ +CP + C Q KD +CC V T GS
Sbjct: 120 SSECPIEFLPEMQFCAAQGKDHSQCCSQSQVDATTAGS 157
>AL132872-3|CAB60759.1| 103|Caenorhabditis elegans Hypothetical
protein Y116F11A.6 protein.
Length = 103
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -1
Query: 338 LRDSLKLLHISKIDCSSLSRNILRRASDSGLFYGHSVTAFDSVFLLLRTES 186
LRDSL+ ++I + ++RN+LR L+ S D++ LL+T++
Sbjct: 24 LRDSLQQINIRDVVPLLVARNVLRSYEMGALYEKGSGEQVDALIDLLKTKN 74
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
protein C37C3.6c protein.
Length = 1487
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 141 CTVAEDCPSDIRARTGLCPKQQKDGI-ECCYGVS-VKETRVGSTAENVS 281
C V +DCP+ + + G CP E +G S ET G A+NV+
Sbjct: 696 CNV-DDCPTCVDSEFGCCPDNSTFATGEFNFGCSNCSETEFGCCADNVT 743
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
protein C37C3.6a protein.
Length = 1558
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 141 CTVAEDCPSDIRARTGLCPKQQKDGI-ECCYGVS-VKETRVGSTAENVS 281
C V +DCP+ + + G CP E +G S ET G A+NV+
Sbjct: 696 CNV-DDCPTCVDSEFGCCPDNSTFATGEFNFGCSNCSETEFGCCADNVT 743
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
protein C37C3.6b protein.
Length = 2167
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 141 CTVAEDCPSDIRARTGLCPKQQKDGI-ECCYGVS-VKETRVGSTAENVS 281
C V +DCP+ + + G CP E +G S ET G A+NV+
Sbjct: 696 CNV-DDCPTCVDSEFGCCPDNSTFATGEFNFGCSNCSETEFGCCADNVT 743
>Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 26.6 bits (56), Expect = 7.7
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Frame = +3
Query: 39 FCAMCILVYGN--------SEDDFC-EIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGL 191
FCA C+ VY N D++C +D + G C+ CPS A
Sbjct: 67 FCANCLQVYNNDCFGEGNPDADNWCVPVDEVPVTIDINAAGDQCSSTFQCPSGTFASFDY 126
Query: 192 CPKQQKDGIECCYGVSVKETRVGSTAENVSR 284
++ G+ G+ T NV R
Sbjct: 127 GEPTEESGVNA--GMDPVTITCAETGANVGR 155
>Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical
protein ZK1010.4 protein.
Length = 263
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 135 GLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRVG 260
G+ + CP + A C Q +D +CC V T G
Sbjct: 169 GMYFKTDGCPLEAAADMHFCAAQGRDHTQCCVRNGVTTTLAG 210
>U58751-9|AAB00660.1| 133|Caenorhabditis elegans Hypothetical
protein C07G1.6 protein.
Length = 133
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 148 TVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMM 20
T H PP +R S+ + S S +SS P K H + N ++
Sbjct: 48 TAHTPPLIRASSTSASASASTSTSSSRP--KKHYLEKNMEHLL 88
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 26.6 bits (56), Expect = 7.7
Identities = 28/71 (39%), Positives = 35/71 (49%)
Frame = -2
Query: 340 FFGTV*SFFIYQRLTAVAFRETFSAVLPTLVSFTDTP*QHSIPSFCCLGQSPVLALISDG 161
+FGT+ Y R + FR F AV PTL P QHS +G LA+I +G
Sbjct: 436 YFGTLIIVMNYCRERS--FRRLF-AVQPTLAERYGLP-QHS-GLMTAIG----LAVIMEG 486
Query: 160 QSSATVHKPPS 128
SSAT H P+
Sbjct: 487 ISSATYHVCPN 497
>AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 26.6 bits (56), Expect = 7.7
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Frame = +3
Query: 39 FCAMCILVYGN--------SEDDFC-EIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGL 191
FCA C+ VY N D++C +D + G C+ CPS A
Sbjct: 67 FCANCLQVYNNDCFGEGNPDADNWCVPVDEVPVTIDINAAGDQCSSTFQCPSGTFASFDY 126
Query: 192 CPKQQKDGIECCYGVSVKETRVGSTAENVSR 284
++ G+ G+ T NV R
Sbjct: 127 GEPTEESGVNA--GMDPVTITCAETGANVGR 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,385,343
Number of Sequences: 27780
Number of extensions: 197170
Number of successful extensions: 595
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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