Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30708.Seq
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    29   1.8  
At4g11900.1 68417.m01893 S-locus lectin protein kinase family pr...    28   2.4  
At1g17590.3 68414.m02169 CCAAT-binding transcription factor (CBF...    28   2.4  
At1g17590.2 68414.m02168 CCAAT-binding transcription factor (CBF...    28   2.4  
At1g17590.1 68414.m02167 CCAAT-binding transcription factor (CBF...    28   2.4  
At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:...    28   3.1  
At3g06180.1 68416.m00710 expressed protein                             27   4.1  
At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /...    27   7.2  
At1g62530.1 68414.m07055 hypothetical protein                          27   7.2  
At5g53920.1 68418.m06709 ribosomal protein L11 methyltransferase...    26   9.6  
At4g07960.1 68417.m01276 glycosyl transferase family 2 protein s...    26   9.6  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    26   9.6  
At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containi...    26   9.6  

>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
           catalytic subunit, putative similar to SP|O48653 DNA
           polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
           sativa}; contains Pfam profiles: PF03175 DNA polymerase
           type B, organellar and viral, PF00136 DNA polymerase
           family B, PF03104 DNA polymerase family B, exonuclease
           domain
          Length = 1492

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 335 RDSLKLLHISKIDCSSLSRNILR-RASDSGLFYGHSVTAFDSVFLLLRTESSSGSDIRWT 159
           ++   +L I   + + L+R  L     DS +  GH+++ FD   LL R ++       W+
Sbjct: 637 KNGCNVLSIENSERALLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQACKVQSSMWS 696

Query: 158 VLSHSTQTTFP 126
            +    ++  P
Sbjct: 697 KIGRLKRSFMP 707


>At4g11900.1 68417.m01893 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 849

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 221 FDSVFLLLRTESSSGSDIRWTVLSHSTQTTFPAARILLFNGIY 93
           FDS  L+LR   +S + + W    H + T  P  +I L + ++
Sbjct: 160 FDSGNLVLRDGPNSSAAVLWQSFDHPSDTWLPGGKIRLGSQLF 202


>At1g17590.3 68414.m02169 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 328

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 323 KLLHISKIDCSSLSRNILRRASDSGLFYGHS 231
           +L + +  DCS+ SR+ +  ASDS   +GHS
Sbjct: 261 QLQNSNDCDCSTTSRSDITSASDSVNLFGHS 291


>At1g17590.2 68414.m02168 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 328

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 323 KLLHISKIDCSSLSRNILRRASDSGLFYGHS 231
           +L + +  DCS+ SR+ +  ASDS   +GHS
Sbjct: 261 QLQNSNDCDCSTTSRSDITSASDSVNLFGHS 291


>At1g17590.1 68414.m02167 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 328

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 323 KLLHISKIDCSSLSRNILRRASDSGLFYGHS 231
           +L + +  DCS+ SR+ +  ASDS   +GHS
Sbjct: 261 QLQNSNDCDCSTTSRSDITSASDSVNLFGHS 291


>At1g08140.1 68414.m00896 cation/hydrogen exchanger (CHX6a) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 818

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
 Frame = -1

Query: 296 CSSLSRNILRRASDSGLF--------YGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHST 141
           C SL+     R  DS +         +  S++AF S+  LL+      S+     LS + 
Sbjct: 169 CGSLTFRYRERRGDSSILRMEYRLIIFLQSISAFTSIDTLLKDLQIKHSEFGRIALSGAM 228

Query: 140 QTTFPAARILLFNGIYFTEI 81
            T   A  +  FN IY+ ++
Sbjct: 229 VTDMLAFGVTFFNAIYYEKL 248


>At3g06180.1 68416.m00710 expressed protein 
          Length = 241

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 181 LALISDGQSSATVHKPPSLRHGSSCSMESISQKSSS 74
           L L+SD + S T   PPS     S S  S S  SSS
Sbjct: 4   LLLLSDEEHSTTNSMPPSSSASRSASNHSSSSSSSS 39


>At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /
           cystatin, putative similar to cysteine proteinase
           inhibitor [Glycine max] GI:1944342; contains Pfam
           profile PF00031: Cystatin domain
          Length = 232

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 133 PSLRHGSSCSMESISQKSSSLFP 65
           P ++  +  +M+S+ QKS+SLFP
Sbjct: 162 PEVQEAAKHAMKSLQQKSNSLFP 184


>At1g62530.1 68414.m07055 hypothetical protein
          Length = 282

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 21/94 (22%), Positives = 35/94 (37%)
 Frame = +3

Query: 72  SEDDFCEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKET 251
           S D  C +D + ++D C      C  AE+  +        C   Q    EC   +S    
Sbjct: 102 SIDHQCGLDGVHEKD-CSASPASCCTAEN--NSRTEGEDSCEVIQM-AAECLVHISAVSH 157

Query: 252 RVGSTAENVSRKATAVNL*YMKKLQTVPKNDCCI 353
                 +   R   +  L  ++  +TVP+  CC+
Sbjct: 158 NQSHGVQEPGRSCDSFELHTLEIRETVPEELCCV 191


>At5g53920.1 68418.m06709 ribosomal protein L11
           methyltransferase-related similar to ribosomal protein
           L11 methyltransferase; PrmA [Escherichia coli] GI:455655
          Length = 371

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 311 ISKIDCSSLSRNILR--RASDSGLFYGHSVTAFDSVFLLLRTESSSGS 174
           I    C +LSR+ILR  R      F   +  +  S+F  L T SSS S
Sbjct: 7   IKHFPCKNLSRHILRDSRVRPLCFFTSSTPPSSFSIFASLSTSSSSSS 54


>At4g07960.1 68417.m01276 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 699

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 231 GVSVKETRVGSTAENVSRKATAVNL*YMKKL 323
           GVS  ET     AE   RK    N  YMK+L
Sbjct: 624 GVSAPETEAEKKAEKTKRKKKKHNRIYMKEL 654


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 69   NSEDDFCEIDSIEQEDPCRREGGLCTVAEDCPSDIRAR-TGLCPKQQ 206
            N+E  +C    + Q  P  +EG L     +C  ++R + TG+ PK++
Sbjct: 4292 NNEKSYCRDVLLSQFSPVFKEGKLLAENLNCLLNVRDQSTGMEPKER 4338


>At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR domains: Pfam profile:
           PF01535: PPR repeat
          Length = 690

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 242 YGHSVTAFDSVFLLLRTESSSGSDI---RWTVLSHSTQTTFPAARILLFNGIY 93
           YG ++   ++  +LL  ES   S +   RW  +S    + +  A +L+ NG++
Sbjct: 63  YGSNLQRNETNLVLLSLESEPNSALKYFRWAEISGKDPSFYTIAHVLIRNGMF 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,736,479
Number of Sequences: 28952
Number of extensions: 182460
Number of successful extensions: 572
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)