Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30705.Seq
(511 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 0.79
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 23 1.4
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 3.2
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 3.2
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 3.2
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 3.2
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 5.6
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 5.6
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 5.6
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 9.8
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.8
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 0.79
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 457 DGFLSSTDDVGSFRGSW 407
DG SS D GS GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 23.4 bits (48), Expect = 1.4
Identities = 9/52 (17%), Positives = 19/52 (36%)
Frame = -3
Query: 206 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQV 51
H L V + CT+ + + + H++ +SS+ P +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.2 bits (45), Expect = 3.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 134 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 232
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 3.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 134 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 232
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 3.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 134 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 232
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 3.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 134 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 232
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 140 DVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVT 30
++YN S+ + ++RGE S+ + VP +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 5.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 143 RQWCSSKGYATQSIPWKDRSRV 208
R C GY +SI W+ +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.4 bits (43), Expect = 5.6
Identities = 5/13 (38%), Positives = 7/13 (53%)
Frame = +2
Query: 218 CSCSRCDCQQACC 256
C C C+ + CC
Sbjct: 435 CECKTCNSKTKCC 447
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 20.6 bits (41), Expect = 9.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 173 WHTLLNCTIASDVYNV 126
WHT+ NC + V+ +
Sbjct: 236 WHTVGNCDGLTSVFRI 251
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 20.6 bits (41), Expect = 9.8
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -2
Query: 51 PWCRGGNPW 25
PW GNPW
Sbjct: 135 PWRTCGNPW 143
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 20.6 bits (41), Expect = 9.8
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -2
Query: 51 PWCRGGNPW 25
PW GNPW
Sbjct: 188 PWRTCGNPW 196
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,454
Number of Sequences: 438
Number of extensions: 2916
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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