Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30704.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.5  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    22   4.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.5  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   6.0  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   6.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 113 SENTKCNGSSGYSKHSKXL 169
           SE T CNGS G S   + L
Sbjct: 300 SEKTLCNGSKGISPEQEEL 318


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 149 YSRCCHYILCSHWVSAGSCPCXRQRXSYSRHFLLYF*HKIHFKXAVT 9
           + R  H    S+   A      RQR +Y+RH +L    + H+   +T
Sbjct: 213 WMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLT 259


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 149 YSRCCHYILCSHWVSAGSCPCXRQRXSYSRHFLLYF*HKIHFKXAVT 9
           + R  H    S+   A      RQR +Y+RH +L    + H+   +T
Sbjct: 213 WMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLT 259


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 149 YSRCCHYILCSHWVSAGSCPCXRQRXSYSRHFLLYF*HKIHFKXAVT 9
           + R  H    S+   A      RQR +Y+RH +L    + H+   +T
Sbjct: 213 WMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLT 259


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  RQRXSYSRHFLLYF*HKIHFKXAVT 9
           RQR SY+R+  L    + HF   +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  RQRXSYSRHFLLYF*HKIHFKXAVT 9
           RQR SY+R+  L    + HF   +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  RQRXSYSRHFLLYF*HKIHFKXAVT 9
           RQR SY+R+  L    + HF   +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  RQRXSYSRHFLLYF*HKIHFKXAVT 9
           RQR SY+R+  L    + HF   +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  RQRXSYSRHFLLYF*HKIHFKXAVT 9
           RQR SY+R+  L    + HF   +T
Sbjct: 178 RQRTSYTRYQTLELEKEFHFNRYLT 202


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  RQRXSYSRHFLLYF*HKIHFKXAVT 9
           RQR SY+R+  L    + HF   +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
          protein.
          Length = 100

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83 RQRXSYSRHFLLYF*HKIHFKXAVT 9
          RQR SY+R+  L    + HF   +T
Sbjct: 10 RQRTSYTRYQTLELEKEFHFNRYLT 34


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  RQRXSYSRHFLLYF*HKIHFKXAVT 9
           RQR SY+R+  L    + HF   +T
Sbjct: 222 RQRTSYTRYQTLELEKEFHFNRYLT 246


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 95 CPCXRQRXSYSRHFLLYF*HKIHFKXAVT 9
          CP  R R +Y+R   L    + HF   +T
Sbjct: 4  CPRRRGRQTYTRFQTLELEKEFHFNHYLT 32


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 95  CPCXRQRXSYSRHFLLYF*HKIHFKXAVT 9
           CP  R R +Y+R   L    + HF   +T
Sbjct: 155 CPRRRGRQTYTRFQTLELEKEFHFNHYLT 183


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 95  CPCXRQRXSYSRHFLLYF*HKIHFKXAVT 9
           CP  R R +Y+R   L    + HF   +T
Sbjct: 214 CPRRRGRQTYTRFQTLELEKEFHFNHYLT 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,874
Number of Sequences: 336
Number of extensions: 2049
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)