Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30704.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 115 6e-27
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 75 6e-15
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 72 6e-14
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 69 4e-13
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 66 5e-12
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 65 6e-12
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 54 2e-08
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 50 2e-07
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 31 0.097
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 28 1.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 2.1
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 25 8.4
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 25 8.4
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 115 bits (276), Expect = 6e-27
Identities = 57/87 (65%), Positives = 71/87 (81%)
Frame = +2
Query: 248 IXMLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ +L PA KVLVELAQ QD+EVGDGTTSVVIIAAELL+ A+ELVK KIHPT+II+GY
Sbjct: 67 LSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGY 126
Query: 428 RXXCKEAVKYIQDNLTVTVESLGRPSL 508
R +EAVK++ D L+ +V+SLG+ SL
Sbjct: 127 RLAIREAVKFMTDVLSCSVDSLGKESL 153
Score = 59.7 bits (138), Expect = 3e-10
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = +3
Query: 78 LSXAGTRSCXXPVRTQXXXXXXXXXXXXXXSLGPXGLDKMLVDDIGDVTVTNDGATIL 251
L +G + VR Q SLGP GLDKMLVDDIGDVTVTNDGATIL
Sbjct: 10 LFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 67
Score = 41.5 bits (93), Expect = 9e-05
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 508 VNTAXTTMSSKLIGADADFFSEMVVDA 588
+N A T+MSSK+IG D+DFFS M VDA
Sbjct: 154 INVAKTSMSSKIIGNDSDFFSTMAVDA 180
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 75.4 bits (177), Expect = 6e-15
Identities = 35/59 (59%), Positives = 45/59 (76%)
Frame = +2
Query: 275 AAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
AAKVLV ++++QD+EVGDGTTSV + AAELL+ A+ +V KIHP II GYR K A+
Sbjct: 76 AAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAI 134
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDI-GDVTVTNDGATIL 251
+LGP G+DK+L + GD+ VTNDGATIL
Sbjct: 39 TLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 511 NTAXTTMSSKLIGADADFFSEMVVDA 588
N A TT+SSK++ + + F+++ VDA
Sbjct: 157 NIARTTLSSKILSQNKNHFAQLAVDA 182
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 72.1 bits (169), Expect = 6e-14
Identities = 35/71 (49%), Positives = 50/71 (70%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK ++ELA+ QDEEVGDGTTSV+I+A E+L A L+ KIHP +I ++ ++A+
Sbjct: 73 PAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDAL 132
Query: 452 KYIQDNLTVTV 484
I D +T+ V
Sbjct: 133 SII-DEITLPV 142
Score = 34.7 bits (76), Expect = 0.010
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 171 LGPXGLDKMLVDDIGDVTVTNDGATIL 251
LGP + KML+D +G V +TNDG IL
Sbjct: 39 LGPRAMLKMLLDPVGSVLLTNDGHAIL 65
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 69.3 bits (162), Expect = 4e-13
Identities = 30/61 (49%), Positives = 44/61 (72%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
AK+LV+L++ QD+E+GDGTT VV++A LL+ A+ L+ IHP I GY C+ AVK+
Sbjct: 90 AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKH 149
Query: 458 I 460
+
Sbjct: 150 L 150
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP GLDK+L+ G++TVTNDGATIL
Sbjct: 53 SLGPRGLDKILISPDGEITVTNDGATIL 80
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 65.7 bits (153), Expect = 5e-12
Identities = 34/71 (47%), Positives = 45/71 (63%)
Frame = +2
Query: 254 MLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRX 433
+L PAAK LV++A+ QD EVGDGTTSVV+ A ELL+ A V+ + II GYR
Sbjct: 72 LLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRK 131
Query: 434 XCKEAVKYIQD 466
+ AV I++
Sbjct: 132 AAQLAVNKIKE 142
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G DK++VDD G+V ++NDGATI+
Sbjct: 43 TLGPLGADKLMVDDRGEVVISNDGATIM 70
Score = 31.5 bits (68), Expect = 0.097
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +1
Query: 517 AXTTMSSKLIGADADFFSEMVVDA 588
A T M+SKLI +++ FF++MVVDA
Sbjct: 163 ASTAMNSKLIRSNSTFFTKMVVDA 186
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 65.3 bits (152), Expect = 6e-12
Identities = 35/79 (44%), Positives = 50/79 (63%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK+LV+L+ QD E GDGTTSVVI+A +L A++L+K IHPT I ++ V
Sbjct: 73 PAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTV 132
Query: 452 KYIQDNLTVTVESLGRPSL 508
+++N + +E R SL
Sbjct: 133 DCMKEN-ALAIELSDRESL 150
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G+DKM+ G+V +TNDGATIL
Sbjct: 38 SLGPKGMDKMIQTGKGEVILTNDGATIL 65
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 53.6 bits (123), Expect = 2e-08
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
P A + + A QD+ GDGTTSV ++ ELLK A+ ++ +HP+ I G+ EA+
Sbjct: 70 PTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEAL 129
Query: 452 KYI 460
++
Sbjct: 130 TFL 132
Score = 33.1 bits (72), Expect = 0.032
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G KMLVD G + +T DG +L
Sbjct: 35 NLGPTGTTKMLVDGAGAIKLTKDGKVLL 62
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +2
Query: 248 IXMLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
I L PAAK++V+ Q Q+ E+GD VV+ ELL A+ +++ + P I GY
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 428 RXXCKEAVKYIQDNLTVTVESL 493
++ +++ +E++
Sbjct: 132 EMALSHTMEVLEEICADKIETV 153
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G +K++V+ + +TND ATI+
Sbjct: 45 SLGPNGKNKIVVNHLQQTFLTNDAATII 72
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 31.5 bits (68), Expect = 0.097
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
A+++ ++A +E GDGTT+ ++ + V +P + G + V++
Sbjct: 102 ARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEF 161
Query: 458 IQDN 469
+Q N
Sbjct: 162 LQAN 165
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 392 TKIHPTSIISGYRXXCKEAVKYIQDNLTVTVESLGRPSLSTQ 517
T +HP I+ +R ++ V Y+Q +L+ + R LS Q
Sbjct: 82 THVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQ 123
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 335 TSVVIIAAELLKNADELVKTKIHPTSIISGY 427
T++++++ LL E + TK+HP+ +S Y
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVY 332
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 8.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 169 PLXXLVWIRCWLTILGM 219
PL ++W+ CW +LG+
Sbjct: 150 PLSKMMWVFCWRWLLGV 166
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.0 bits (52), Expect = 8.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 169 PLXXLVWIRCWLTILGM 219
PL ++W+ CW +LG+
Sbjct: 150 PLSKMMWVFCWRWLLGV 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,846
Number of Sequences: 5004
Number of extensions: 29865
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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