Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30704.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 95 3e-23
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 81 9e-16
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 73 1e-13
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 73 2e-13
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 65 5e-11
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 65 5e-11
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 62 2e-10
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 60 2e-09
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 58 7e-09
10_08_0620 - 19321612-19323237 56 2e-08
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 46 2e-05
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 33 0.13
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 33 0.17
03_06_0760 - 36067752-36068045,36068260-36068711,36069263-360695... 32 0.30
12_01_1011 + 10292709-10292765,10293003-10293156,10294062-102941... 31 0.53
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 31 0.53
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 95.5 bits (227), Expect(2) = 3e-23
Identities = 47/61 (77%), Positives = 52/61 (85%)
Frame = +2
Query: 248 IXMLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ ML PAAKVLVELA+LQD EVGDGTTSVVIIAAELLK ++LV+ KIHPTSIISGY
Sbjct: 19 LRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVRNKIHPTSIISGY 78
Query: 428 R 430
R
Sbjct: 79 R 79
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +1
Query: 508 VNTAXTTMSSKLIGADADFFSEMVVDAAQA 597
+N A T+MSSKLI +D+DFF+ +VVDA QA
Sbjct: 134 INCAKTSMSSKLINSDSDFFANLVVDAVQA 163
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 195 MLVDDIGDVTVTNDGATIL 251
MLVDDIGDVT+TNDGATIL
Sbjct: 1 MLVDDIGDVTITNDGATIL 19
Score = 30.7 bits (66), Expect(2) = 3e-23
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 425 YRXXCKEAVKYIQDNLTVTVESLGRPSL 508
Y+ +EA KY+++ L V V+ LG+ SL
Sbjct: 106 YQLAMREACKYVEEKLAVKVDKLGKDSL 133
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 80.6 bits (190), Expect = 9e-16
Identities = 35/53 (66%), Positives = 48/53 (90%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYR 430
PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV KIHP +II+GYR
Sbjct: 72 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGYR 124
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 508 VNTAXTTMSSKLIGADADFFSEMVVDA 588
+N A TT+SSK++ D ++F+E+ VDA
Sbjct: 153 MNIAMTTLSSKILSQDKEYFAELAVDA 179
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIG---DVTVTNDGATIL 251
+LGP G+DK+L G VTVTNDGATIL
Sbjct: 35 TLGPKGMDKIL-QSTGRGRSVTVTNDGATIL 64
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/50 (64%), Positives = 45/50 (90%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 421
PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV KIHP +II+
Sbjct: 73 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIA 122
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIG---DVTVTNDGATIL 251
+LGP G+DK+L G VTVTNDGATIL
Sbjct: 36 TLGPKGMDKIL-QSTGRGRSVTVTNDGATIL 65
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 508 VNTAXTTMSSKLIGADADFFSEMVVDA 588
+N A TT+SSK++ D ++F+ + VDA
Sbjct: 130 MNIAMTTLSSKILSQDKEYFAGLAVDA 156
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +2
Query: 254 MLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRX 433
+L PAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +HP S+I YR
Sbjct: 71 LLDIIHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRSYRT 130
Query: 434 XCKEAVKYIQDNLTVTVE 487
A++ ++D L ++E
Sbjct: 131 AGHLAIEKVKD-LATSIE 147
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G+DK++ DD G T++NDGATI+
Sbjct: 42 TLGPRGMDKLIHDDKGGTTISNDGATIM 69
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 517 AXTTMSSKLIGADADFFSEMVVDAAQA 597
A TT+SSKLIG + +FF+ MVVDA A
Sbjct: 162 AATTLSSKLIGGEKEFFASMVVDAVLA 188
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 64.9 bits (151), Expect = 5e-11
Identities = 31/79 (39%), Positives = 50/79 (63%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ + HPT I Y ++A+
Sbjct: 75 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHYHPTVICRAYTKALEDAL 134
Query: 452 KYIQDNLTVTVESLGRPSL 508
+ D + + V+ R ++
Sbjct: 135 A-VLDKIAMHVDVNDRAAM 152
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP + KML+D G + VTNDG IL
Sbjct: 40 TLGPRSMLKMLLDASGGIVVTNDGNAIL 67
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/72 (41%), Positives = 45/72 (62%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK ++EL++ QDEEVGDGTTSV+++A E+L A + HPT I Y +A+
Sbjct: 75 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVICRAYTKALDDAL 134
Query: 452 KYIQDNLTVTVE 487
+ D + + V+
Sbjct: 135 S-VLDKIAIPVD 145
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP + KML+D G + VTNDG IL
Sbjct: 40 TLGPQSMLKMLLDAAGGIVVTNDGNCIL 67
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK+LV + Q EE+GDG + A ELL+ A+EL++ +HP+ II GY + V
Sbjct: 76 PAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELIRMGLHPSEIIIGYTKAINKTV 135
Query: 452 KYIQD 466
+ ++D
Sbjct: 136 EILED 140
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G++KM+++ + + VTND ATI+
Sbjct: 41 SLGPNGMNKMVINHLDKLFVTNDAATIV 68
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
AK++VEL+ QD E+GDGTT VV++A LL+ A++L++ IHP I GY + A +
Sbjct: 84 AKLMVELSCSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYELASRIAFDH 143
Query: 458 IQ 463
++
Sbjct: 144 LE 145
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G+DKML GDVT+TNDGATIL
Sbjct: 47 SLGPKGMDKMLQSPDGDVTITNDGATIL 74
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 57.6 bits (133), Expect = 7e-09
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAA++L EL++ QD GDGTT+VV++A LL+ A L+ HPT+ AV
Sbjct: 80 PAARMLAELSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHRLATRAV 139
Query: 452 KYIQDNLTVTVESLGRPSL 508
+ + + + +E R SL
Sbjct: 140 EVLH-AMAIPIELSDRDSL 157
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G+DKM+ +V +TNDGATIL
Sbjct: 45 SLGPRGMDKMISSGEQEVIITNDGATIL 72
>10_08_0620 - 19321612-19323237
Length = 541
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAA++L +L++ QD GDGTT+VV++A LL+ A L+ HPT+ AV
Sbjct: 84 PAARMLADLSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHLLAARAV 143
Query: 452 KYIQDNLTVTVESLGRPSL 508
+ + + + VE R +L
Sbjct: 144 EVLH-GMAIPVELSDRDAL 161
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDI--GD--VTVTNDGATIL 251
SLGP G+DKM+ GD V +TNDGATIL
Sbjct: 45 SLGPRGMDKMISSSSSGGDQAVIITNDGATIL 76
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
P A ++ A QD+ GDGTTS V+ EL+K ++ + HP ++ G+ + +
Sbjct: 71 PTAIMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERCIDEGTHPRFLVDGFDVAKRATL 130
Query: 452 KYIQDNLTVTV 484
++++ T V
Sbjct: 131 EFLEKFKTSVV 141
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G KMLV GD+ +T DG T+L
Sbjct: 36 NLGPKGTIKMLVGGAGDIKLTKDGNTLL 63
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
AK++ + A ++ GDGTT+ V++A ++ ++V +P I G K V
Sbjct: 123 AKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIEKTAKALVSE 182
Query: 458 IQ 463
+Q
Sbjct: 183 LQ 184
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
AK++ + A ++ GDGTT+ V++A L+ ++V +P I G K V+
Sbjct: 127 AKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEE 186
Query: 458 IQ 463
++
Sbjct: 187 LK 188
>03_06_0760 -
36067752-36068045,36068260-36068711,36069263-36069569,
36069719-36069864,36069989-36070196,36070339-36070460,
36070621-36070789,36070875-36070931
Length = 584
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISG 424
A ++ E+A ++ GDGTT+ ++A E++K V + +P SI G
Sbjct: 111 AALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKKG 159
>12_01_1011 +
10292709-10292765,10293003-10293156,10294062-10294183,
10294288-10294495,10294644-10294789,10294920-10295226,
10295666-10296117,10296388-10296678
Length = 578
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISG 424
A ++ E+A ++ GDGTT+ ++A E++K V + +P S+ G
Sbjct: 106 AALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKKG 154
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 293 ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISG 424
++A + VGDGTT+ +I+A E++ V T +P ++ G
Sbjct: 638 QIASKTNSSVGDGTTTAIILAREIINLGLLAVATGANPVALRKG 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,819,671
Number of Sequences: 37544
Number of extensions: 202900
Number of successful extensions: 437
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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