Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30704.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 82 3e-16
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 69 2e-12
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 66 3e-11
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 44 9e-05
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 42 5e-04
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 39 0.004
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 33 0.23
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017) 30 1.6
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 28 5.0
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/64 (56%), Positives = 52/64 (81%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV KIHP +I++G+R K A
Sbjct: 76 PAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAE 135
Query: 452 KYIQ 463
K ++
Sbjct: 136 KALE 139
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +3
Query: 168 SLGPXGLDKMLVD--DIGDVTVTNDGATIL 251
+LGP G+DK+L G++ VTNDGATIL
Sbjct: 39 TLGPKGMDKILQSFGQNGNIQVTNDGATIL 68
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 472 HSNSRVTWQAVSVNTAXTTMSSKLIGADADFFSEMVVDA 588
HS+ ++ +N A TT+SSK++ D F+++ VDA
Sbjct: 145 HSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDA 183
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/56 (53%), Positives = 45/56 (80%)
Frame = +2
Query: 296 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKYIQ 463
L+++QD+EVGDGTTSV ++A+ELLK A++LV KIHP +I++G+R K A K ++
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 472 HSNSRVTWQAVSVNTAXTTMSSKLIGADADFFSEMVVDA 588
HS+ ++ +N A TT+SSK++ D F+++ VDA
Sbjct: 63 HSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDA 101
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/67 (41%), Positives = 47/67 (70%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++HPT II+ YR + +
Sbjct: 17 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 76
Query: 452 KYIQDNL 472
++ +
Sbjct: 77 DILKQQI 83
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/67 (41%), Positives = 47/67 (70%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK ++E+++ QDEEVGDGTTSV+I+A E + A+ ++ ++HPT II+ YR + +
Sbjct: 214 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 273
Query: 452 KYIQDNL 472
++ +
Sbjct: 274 DILKQQI 280
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 65.7 bits (153), Expect = 3e-11
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Frame = +2
Query: 248 IXMLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ M+ AK++VEL++ QD E+GDGTT VV++A LL++A++L+ IHP I GY
Sbjct: 76 LGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGY 135
Query: 428 RXXCKEAVKY---IQDNLTV---TVESLGRPSLST 514
K A+++ I DN V ESL + +++T
Sbjct: 136 ELAAKIALEHMDSIADNFPVDKDNKESLIQTAMTT 170
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G+DKM+V G+VTVTNDGATIL
Sbjct: 49 SLGPKGMDKMMVSPDGEVTVTNDGATIL 76
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/65 (38%), Positives = 39/65 (60%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
P A ++ +A QD+ GDGTTS V+I ELLK AD V +HP + G+ K+A+
Sbjct: 174 PTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKAL 233
Query: 452 KYIQD 466
+ +++
Sbjct: 234 EVLEE 238
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATI 248
SLGP G+DKM+ GDVT+TNDGATI
Sbjct: 43 SLGPKGMDKMIQGGNGDVTITNDGATI 69
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G+DK++VD G T++NDGATI+
Sbjct: 674 TLGPRGMDKLIVDGRGKATISNDGATII 701
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 508 VNTAXTTMSSKLIGADADFFSEMVVDAAQA 597
V+ A T +SSKLIG DFF+ M+VDA A
Sbjct: 14 VSAANTALSSKLIGQQGDFFANMIVDAVMA 43
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
S GP GLD ML G++ +TN G+ IL
Sbjct: 19 SFGPNGLDVMLRSSSGNILITNSGSMIL 46
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 517 AXTTMSSKLIGADADFFSEMVVDA 588
A T +SSKLI +FF++MVVDA
Sbjct: 28 AATALSSKLIATQKEFFAKMVVDA 51
>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
Length = 472
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 245 CGTIVSDCNIPNIVNQHLIQTXWXKGXXYYVCYSRCCHYILCSHWV 108
C + +DCN L +G CY CC LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 421
A+++ ++A +EE GDGTT+ ++A + V +P + S
Sbjct: 127 ARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSS 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,112
Number of Sequences: 59808
Number of extensions: 238831
Number of successful extensions: 456
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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