Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30704.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 116 1e-26
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 81 6e-16
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 69 2e-12
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 68 6e-12
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 66 1e-11
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 64 5e-11
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 60 8e-10
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 60 8e-10
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 48 6e-06
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 47 1e-05
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 40 0.001
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 33 0.11
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 31 0.44
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 30 1.0
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 30 1.3
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 30 1.3
At2g46640.1 68415.m05818 hypothetical protein and genefinder; e... 27 9.5
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 27 9.5
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 27 9.5
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 116 bits (279), Expect = 1e-26
Identities = 57/87 (65%), Positives = 68/87 (78%)
Frame = +2
Query: 248 IXMLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ ML PAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSIISGY
Sbjct: 65 LRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGY 124
Query: 428 RXXCKEAVKYIQDNLTVTVESLGRPSL 508
R +E+ KYI++ L VE LG+ L
Sbjct: 125 RLAMRESCKYIEEKLVTKVEKLGKVPL 151
Score = 64.1 bits (149), Expect = 7e-11
Identities = 35/65 (53%), Positives = 37/65 (56%)
Frame = +3
Query: 57 MSTIAAPLSXAGTRSCXXPVRTQXXXXXXXXXXXXXXSLGPXGLDKMLVDDIGDVTVTND 236
MS A +G R VRTQ SLGP GLDKMLVDDIGDVT+TND
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 237 GATIL 251
GATIL
Sbjct: 61 GATIL 65
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +1
Query: 508 VNTAXTTMSSKLIGADADFFSEMVVDA 588
+N A T+MSSKLI D+DFF+ +VV+A
Sbjct: 152 INCAKTSMSSKLISGDSDFFANLVVEA 178
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 81.0 bits (191), Expect = 6e-16
Identities = 35/53 (66%), Positives = 49/53 (92%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYR 430
PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GYR
Sbjct: 74 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYR 126
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGD--VTVTNDGATIL 251
+LGP G+DK+L VTVTNDGATIL
Sbjct: 37 TLGPKGMDKILQSTGRGHAVTVTNDGATIL 66
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 517 AXTTMSSKLIGADADFFSEMVVDA 588
A TT+ SK++ D + F+EM VDA
Sbjct: 158 AMTTLCSKILSQDKEHFAEMAVDA 181
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +2
Query: 254 MLXXXXPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRX 433
+L PAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I YR
Sbjct: 71 LLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRT 130
Query: 434 XCKEAVKYIQDNLTVTVE 487
A+ +++ L V++E
Sbjct: 131 ASTLAIAKVKE-LAVSIE 147
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G+DK++ DD G VT++NDGATI+
Sbjct: 42 TLGPRGMDKLIHDDKGSVTISNDGATIM 69
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 517 AXTTMSSKLIGADADFFSEMVVDAAQA 597
A TT+SSKLIG + +FF+ MVVDA A
Sbjct: 162 AATTLSSKLIGGEKEFFATMVVDAVMA 188
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 67.7 bits (158), Expect = 6e-12
Identities = 31/74 (41%), Positives = 48/74 (64%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK+LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY +AV
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 452 KYIQDNLTVTVESL 493
+ ++ + E++
Sbjct: 141 EILEQLVETGSETM 154
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G++KM+++ + + VTND ATI+
Sbjct: 46 SLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/79 (46%), Positives = 46/79 (58%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I C +A+
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 452 KYIQDNLTVTVESLGRPSL 508
I + V VE R SL
Sbjct: 142 D-ILTAMAVPVELTDRDSL 159
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G+DKM+ G+V +TNDGATIL
Sbjct: 47 SLGPKGMDKMISTANGEVIITNDGATIL 74
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/72 (38%), Positives = 49/72 (68%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
PAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y ++++
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 452 KYIQDNLTVTVE 487
+ D + ++++
Sbjct: 133 A-VLDKIAMSID 143
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP + KML+D G + VTNDG IL
Sbjct: 38 TLGPRSMLKMLLDAGGGIVVTNDGNAIL 65
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 60.5 bits (140), Expect = 8e-10
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY + AV++
Sbjct: 8 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 67
Query: 458 IQ 463
++
Sbjct: 68 LE 69
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 60.5 bits (140), Expect = 8e-10
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY + AV++
Sbjct: 84 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 143
Query: 458 IQ 463
++
Sbjct: 144 LE 145
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
SLGP G+DKML GD+T+TNDGATIL
Sbjct: 47 SLGPKGMDKMLQGPDGDITITNDGATIL 74
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+ K A
Sbjct: 71 PTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFE-IAKRAT 129
Query: 452 KYIQDNLTVTV 484
DN V
Sbjct: 130 LQFLDNFKTPV 140
Score = 33.9 bits (74), Expect = 0.083
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G KMLV GD+ +T DG T+L
Sbjct: 36 NLGPKGTIKMLVGGSGDIKLTKDGNTLL 63
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 272 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+ + +
Sbjct: 71 PTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATL 130
Query: 452 KYIQDNLTVTV 484
+++ T V
Sbjct: 131 QFLDTFKTPVV 141
Score = 33.9 bits (74), Expect = 0.083
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 168 SLGPXGLDKMLVDDIGDVTVTNDGATIL 251
+LGP G KMLV GD+ +T DG T+L
Sbjct: 36 NLGPKGTIKMLVGGSGDIKLTKDGNTLL 63
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
A ++ E+A +E GDGTT+ +I+A E++K + + S+ +G KE V+
Sbjct: 102 ATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRV 161
Query: 458 IQ 463
+Q
Sbjct: 162 LQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
A ++ E+A ++ GDGTT+ I+A E++K+ V + +P S+ G + ++
Sbjct: 115 AALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEE 174
Query: 458 IQ 463
+Q
Sbjct: 175 LQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
AK++ + A ++ GDGTT+ V++A L+ ++V +P I G K V
Sbjct: 122 AKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALV 179
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAVKY 457
AK++ + A ++ GDGTT+ V++A + ++V +P I G K V
Sbjct: 122 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNE 181
Query: 458 IQ 463
++
Sbjct: 182 LK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
AK++ + A ++ GDGTT+ V++A + ++V +P I G K V
Sbjct: 126 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRXXCKEAV 451
AK++ + A ++ GDGTT+ V++A + ++V +P I G K V
Sbjct: 126 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At2g46640.1 68415.m05818 hypothetical protein and genefinder;
expression supported by MPSS
Length = 310
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 302 QLQDEEVGDGTTSVVIIAAELLKNADE 382
++ D+E G G V+I ++KN D+
Sbjct: 65 EMDDDECGSGDLDYVVIDGSIIKNVDQ 91
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 356 AELLKNADELVKTKIHPTSIISGYRXXCKEAVKYIQDNLTVTVES 490
A+ + DE V H +SI Y C+EA+KY ++ +T E+
Sbjct: 578 AKSMVELDEHVSENGHDSSI-HRYNHLCREAIKYAEEG-AITAEA 620
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 356 AELLKNADELVKTKIHPTSIISGYRXXCKEAVKYIQDNLTVTVES 490
A+ + DE V H +SI Y C+EA+KY ++ +T E+
Sbjct: 578 AKSMVELDEHVSENGHDSSI-HRYNHLCREAIKYAEEG-AITAEA 620
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,223,847
Number of Sequences: 28952
Number of extensions: 160773
Number of successful extensions: 327
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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