Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30702.Seq
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4C0V4 Cluster: Putative uncharacterized protein; n=1; ...    37   0.41 
UniRef50_Q5CUF2 Cluster: WD-40 repeat protein, SMART LisH domain...    35   1.7  
UniRef50_A6QBS6 Cluster: Outer membrane efflux lipoprotein; n=1;...    33   6.7  
UniRef50_Q9YGK0 Cluster: Vitellogenin precursor; n=5; Clupeoceph...    33   8.8  
UniRef50_Q7PVJ8 Cluster: ENSANGP00000024480; n=1; Anopheles gamb...    33   8.8  

>UniRef50_Q4C0V4 Cluster: Putative uncharacterized protein; n=1;
           Crocosphaera watsonii WH 8501|Rep: Putative
           uncharacterized protein - Crocosphaera watsonii
          Length = 541

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = +1

Query: 316 VNRTLKRKRV---LNSFPGIINSHAVFMGFLLMKIRYT-VDVTIYENSETFVAFAILGA 480
           +N+  KRK++   L  F G +  H  ++G  L+   YT + +  Y  SE+F+AF ++GA
Sbjct: 43  MNKIRKRKKIQLILGFFLGYLGGHRYYIGDYLIGAIYTGIGLIAYHQSESFLAFIMIGA 101


>UniRef50_Q5CUF2 Cluster: WD-40 repeat protein, SMART LisH domain;
           n=3; Cryptosporidium|Rep: WD-40 repeat protein, SMART
           LisH domain - Cryptosporidium parvum Iowa II
          Length = 595

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +1

Query: 349 NSFPGIINSHAV----FMGFLLMKIRYTVDVTIYENSETFVAFAILGATGHTNVWETSEG 516
           +S  GII  H +     + +   K  + V+   Y NSET V  A+  + G  N+W+    
Sbjct: 371 SSIEGIIKIHGLKSVRTIKYFPKKSEFFVNKVSYNNSETMVISAL--SNGSINIWDIKSS 428

Query: 517 SQFALIDVC 543
           S  A  D+C
Sbjct: 429 SCIATYDIC 437


>UniRef50_A6QBS6 Cluster: Outer membrane efflux lipoprotein; n=1;
           Sulfurovum sp. NBC37-1|Rep: Outer membrane efflux
           lipoprotein - Sulfurovum sp. (strain NBC37-1)
          Length = 464

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 27/100 (27%), Positives = 44/100 (44%)
 Frame = -2

Query: 537 INERELRSFASLPHICVTSCAQDCEGNERFAIFINRDVYCVAYLHQKKSHKNSMAVNDAW 358
           I++R L S + L  + +T CAQ+  G ++    I      +    +     NS  VND W
Sbjct: 3   IHKRTLLSSSLL--LLLTGCAQNIPGYDKAVADIKTGKDTLKTPGKYSQSINSAKVNDGW 60

Query: 357 ERIQNSFSLQCSIDELKRKRNS*EIRKQV*EEAQRVCKLS 238
            R      L   +DE +R   S +I     E A+ + +L+
Sbjct: 61  IRTFKDKKLDRLVDEAQRNNPSLKIAASRVERAEALTQLT 100


>UniRef50_Q9YGK0 Cluster: Vitellogenin precursor; n=5;
            Clupeocephala|Rep: Vitellogenin precursor - Oreochromis
            aureus (Israeli tilapia)
          Length = 1788

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 546  LTNINERELRSFASLPHICVTSCAQDCEGNERFAIFINRD 427
            LT  N R+ R    LPH C    AQDC    +F + + +D
Sbjct: 1528 LTTFNNRKARD--ELPHSCYQVLAQDCTPELKFMVLLKKD 1565


>UniRef50_Q7PVJ8 Cluster: ENSANGP00000024480; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000024480 - Anopheles gambiae
           str. PEST
          Length = 382

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 609 HSHSLKYAKFSLHSWFSKLCFLTNINERELRSFASLPHICVTS 481
           HS SL    FSLH+W+ K CF+ N+      +   L ++ + S
Sbjct: 107 HSSSLLVGPFSLHAWYRK-CFVFNLGYEAAHTVTLLANLALQS 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,822,420
Number of Sequences: 1657284
Number of extensions: 13338621
Number of successful extensions: 29279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29265
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)