Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30702.Seq
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    31   0.21 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   1.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.5  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   5.9  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   7.8  

>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/55 (30%), Positives = 35/55 (63%)
 Frame = +2

Query: 137 LLYYCNAGHSHARKY*RAVKHSFANLAAVQMGSVLNLQTLCASSYTCLRISHEFL 301
           +L  C    S  RK+   V +S A++ A+ + ++LN+ T+C++SY+ L +++ F+
Sbjct: 63  ILMVCLLSSSEKRKHPVFVFNS-ASIVAMCLRAILNIVTICSNSYSIL-VNYGFI 115


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 428 SRFMKIAKRSLPSQSWAQLVTQMCGRLAKDRSSRS 532
           S F+KI   SLP      L+ Q+C  L  DR S +
Sbjct: 124 SSFLKIYTPSLPEDPIFPLLNQLCNFLLSDRCSNN 158


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 271 HLFANLSRISLPF*FVNRTLKRKRVLNSFPGIINSHAVFMGFL 399
           H  +  S + LP  F+N T++ +++L +FP  +   ++ +G +
Sbjct: 625 HSMSTCSPLFLPETFINLTIQDQKLLGTFPSQLVRLSLIVGHI 667


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/99 (22%), Positives = 43/99 (43%)
 Frame = -2

Query: 642 FITINFYYYTGHSHSLKYAKFSLHSWFSKLCFLTNINERELRSFASLPHICVTSCAQDCE 463
           ++ +  +Y   HS + + +K S+         L N N  +L  + ++PHIC T+  +  +
Sbjct: 58  YVELEKHYVDNHSSNEEASKTSIDGES-----LVNENPCKLPFYLTVPHICETTLTK-AD 111

Query: 462 GNERFAIFINRDVYCVAYLHQKKSHKNSMAVNDAWERIQ 346
               F    N + + +  L  K S   S  V    ++I+
Sbjct: 112 STNGFCEHNNSNDHQLKILQDKGSGSPSSPVMPFKDKIE 150


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 135 CCCTTVMPATHMRANIEGPSN 197
           CCCTTV    HM  N+   S+
Sbjct: 130 CCCTTVHGHPHMPPNLLAASS 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,523
Number of Sequences: 5004
Number of extensions: 60812
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)