Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30702.Seq
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)                     32   0.39 
SB_7495| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.89 
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              31   0.89 
SB_4444| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_5575| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  

>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
          Length = 563

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = +3

Query: 42  RKITCCKYLFPLKCVGTGLCT*RNCGAIYQECCCTTVMPATHMRANIEGPSNIHSQT*RL 221
           R I+C   + P+ CV   +    +C  + +   C TV+    M  +++    +HS    L
Sbjct: 339 RPISCVTVIRPISCVT--VIRPISCVTVIRPISCVTVIRPVTMVGDLKNGRTVHSLARLL 396

Query: 222 CKWVLYSICKPFALPPTL 275
           C   LY +   +  PP+L
Sbjct: 397 C---LYRVTLRYVSPPSL 411


>SB_7495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = +2

Query: 110 KLRGY--LSRML---LYYCNAGHSHARKY*RAVKHSFA 208
           +LR Y  LSR+L   + YCNA  ++ R Y RAV  SFA
Sbjct: 60  RLRNYAFLSRLLAVMMRYCNATVAYVRPYKRAVSESFA 97


>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
 Frame = -2

Query: 609  HSHSLKYAKFSLHSWFSKLCFLTNINERELRSFASLPHICVTSCAQDCEGNERFAIFINR 430
            ++H  + +  S+    + +C     N+R L S  S+ H+C   C        R ++   R
Sbjct: 805  NTHKRRLSVMSIRHVCTAVCLHRIRNKRRL-SVISVRHVCTAVCLHRIRNKRRLSVISVR 863

Query: 429  DVYCVAYLHQKKSHKNSMAVND--AWERIQNSFSLQCSIDELKRKR-NS*EIRKQV*EEA 259
             V     LH+ + +K  ++VN   A+++      L C +   +    N  ++R     E 
Sbjct: 864  HVCTAVCLHRIR-NKRYLSVNTCLAFKQGAGGVYLVCVLSSTEASECNEGDLR-----EI 917

Query: 258  QRVCKLSTEPICTAAKFANECLTA 187
             +   + ++PI   +KF  +C  A
Sbjct: 918  LKAAHIKSKPI--LSKFEAKCTKA 939


>SB_4444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 181 LKGRQTFIRKLSGCANGFCTQFANPLRFLLHLFANLSRISLPF 309
           +K   TF   L GC   + TQ + P  +  HLF  +S +++PF
Sbjct: 165 IKKGSTFRNSLVGCPVSWNTQDSFPALYAHHLFNTVSFLAVPF 207


>SB_5575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 638 LQLTFIIIPVTHIRSNTQSFRCIR-GFPSCVF*QTSMSANCDPSLVSH 498
           L ++F   P+T + ++T    CI  GFP+ V   T +  + DPS +S+
Sbjct: 141 LLMSFPTTPLTIVENSTAVVPCISTGFPAPVINWTKIENSMDPSRMSY 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,819,153
Number of Sequences: 59808
Number of extensions: 477662
Number of successful extensions: 1298
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)