Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30702.Seq
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084152-9|AAK39313.1|  296|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z93388-6|CAB07663.1|  369|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z75955-4|CAB00116.1|  110|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AC084152-9|AAK39313.1|  296|Caenorhabditis elegans Hypothetical
           protein Y102A11A.1 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 367 INSHAVFMGFLLMKIRYTVDVTIYENSETFVAFAILG 477
           I SH  FM  ++++ + T+ +TIY   E   +F ILG
Sbjct: 55  IASHLFFM-IVILQFKSTISITIYSGIEIAFSFVILG 90


>Z93388-6|CAB07663.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.7 protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 546 LTNINERELRSFASLPHICVTSC 478
           L ++N +E + F SLPH+C+T C
Sbjct: 210 LNSVNFKEEKIF-SLPHVCITKC 231


>U53154-8|AAC25846.1|  328|Caenorhabditis elegans Hypothetical
           protein C33G8.5 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/80 (25%), Positives = 36/80 (45%)
 Frame = +1

Query: 301 LPF*FVNRTLKRKRVLNSFPGIINSHAVFMGFLLMKIRYTVDVTIYENSETFVAFAILGA 480
           L F ++    KRKR       +   + +  G   +K    +++ I  N   F  F+ +G 
Sbjct: 202 LAFWYIGVQTKRKRNTQKLQTLSTRYTLEQGIRSIK---ALNMFINANCFVFFFFSFIGT 258

Query: 481 TGHTNVWETSEGSQFALIDV 540
           + H N  + S  + FAL++V
Sbjct: 259 SLHFNSSKMSRPTYFALVEV 278


>Z75955-4|CAB00116.1|  110|Caenorhabditis elegans Hypothetical
           protein R07B7.7 protein.
          Length = 110

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 258 QRVCKLSTEPICTAAKFANECLTALQYLRACEWPALQ*YNNI-LDR*PRNFFTYTNLY 88
           +R CKL+ +P  T  K  N  LTA  Y RA E   +  Y++I +++ P+   T+   Y
Sbjct: 54  KRACKLTEQPTMTKQKRKNTFLTA--YYRAKEICMI--YSHIFINKLPKQKLTFKQFY 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,312,890
Number of Sequences: 27780
Number of extensions: 353628
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)