Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30702.Seq
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    30   1.7  
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family pr...    29   2.2  
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim...    28   5.1  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   5.1  

>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 408 LHQKKSHKNSMAVNDAWERIQNSFSLQCSIDE 313
           L QK  H+N + + DA +R+ N F  +C+ ++
Sbjct: 430 LQQKVVHENDLFLCDACDRLCNGFGYECTFED 461


>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = +3

Query: 42  RKITCCKYLFPLKCVGTGLCT*RNCGAIYQECCCTTVMPATHMRANIEGPSNI 200
           R I  C +LF + C+   L    NC        C T  P   + A    P N+
Sbjct: 152 RIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENL 204


>At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 488

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 609 HSHSLKYAKFSLHSWFSKLCFLTNINERELRSFASLPHICVTSC 478
           H+ SLK+  FS H   S   F T      L  FA +PH+  + C
Sbjct: 4   HAFSLKFHSFSPHYALSLSNFSTQSPNPLLPPFARVPHVTSSVC 47


>At5g41220.1 68418.m05009 glutathione S-transferase, putative
           similar to emb|CAA10662
          Length = 590

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
 Frame = -2

Query: 570 SWFSKLCFLTNINERE----LRSFASL-PHICVTSCAQDCEGNERFAIFINRDVYCVAYL 406
           ++F+    L N+ +RE     + ++ L   +C      D   N+R +     DV+ VAY 
Sbjct: 309 AYFNNSASLANLPKREPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQ 368

Query: 405 HQKKSHKNSMAVNDAWERIQNSFSLQCSIDELKRKRNS*EIRKQV*EEAQRVCKLSTEP 229
               ++K++  +  AW  +++S    CS+   +  +     ++       RV   S+ P
Sbjct: 369 VYTNNYKSNFTLEHAWRELRHS-KKWCSLYPFENSKGGGSSKRTKLNNGDRVYSSSSNP 426


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 427 VTIYENSETFVAFAILGATGHTNVWETSEGSQ 522
           +T Y  SET   FA   + G  NVW+ S  SQ
Sbjct: 125 ITAYMVSETDAMFASASSDGVVNVWDVSFPSQ 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,750
Number of Sequences: 28952
Number of extensions: 308980
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)