Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30701.Seq
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 102 3e-23
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 102 3e-23
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 31 0.10
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 3.0
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 25 6.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 6.8
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 9.0
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 25 9.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 9.0
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 102 bits (245), Expect = 3e-23
Identities = 45/76 (59%), Positives = 61/76 (80%)
Frame = +3
Query: 27 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 206
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 207 DIRVTVKGGGHVAQVY 254
DIRV V GGGHV+Q+Y
Sbjct: 61 DIRVRVSGGGHVSQIY 76
Score = 101 bits (241), Expect = 9e-23
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = +2
Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
IRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVA PRR EPKKFGG GARAR QK
Sbjct: 78 IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137
Query: 437 SYR 445
SYR
Sbjct: 138 SYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 102 bits (245), Expect = 3e-23
Identities = 45/76 (59%), Positives = 61/76 (80%)
Frame = +3
Query: 27 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 206
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 207 DIRVTVKGGGHVAQVY 254
DIRV V GGGHV+Q+Y
Sbjct: 61 DIRVRVSGGGHVSQIY 76
Score = 101 bits (241), Expect = 9e-23
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = +2
Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGGPGARARYQK 436
IRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVA PRR EPKKFGG GARAR QK
Sbjct: 78 IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137
Query: 437 SYR 445
SYR
Sbjct: 138 SYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 48 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 227
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 228 GGGHVAQ 248
GGG Q
Sbjct: 71 GGGPTGQ 77
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 229 VVVM*HKFTYQTSYFKGSDRLLPEICR 309
V+V KF +Y KG+ ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +1
Query: 130 WLSPDCCSTNFRNLSFCSARKNSLWLTSE*QSRVVVM*HKFTYQTSYFKGSDRLLPEI 303
W S D S N S S K S W E + + S K +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 114 RLHAAFHDHACNTQLRWRFS 55
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 256 YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 345
Y YF G D PE C QRH S
Sbjct: 42 YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 302 YVDEASKKEIKDILVQYDRSLLVAXPRRCEPKKFGG 409
++DEA+ K+I + Y +LL P P K GG
Sbjct: 226 FLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 426 DTRNLTVKPSRKPSGGIVAASCCH 497
D N+ VKP+ P+ + CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,254
Number of Sequences: 5004
Number of extensions: 45463
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -