Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30698.Seq
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138...   116   4e-25
UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ...    71   3e-11
UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1; Maconellico...    71   3e-11
UniRef50_Q28WM7 Cluster: GA10879-PA; n=1; Drosophila pseudoobscu...    69   8e-11
UniRef50_Q20589 Cluster: Putative uncharacterized protein; n=2; ...    69   1e-10
UniRef50_Q9NDV2 Cluster: Ribonuclease precursor; n=1; Ceratitis ...    57   4e-07
UniRef50_Q9W286 Cluster: CG11269-PA; n=1; Drosophila melanogaste...    56   8e-07
UniRef50_O02142 Cluster: Putative uncharacterized protein; n=2; ...    55   1e-06
UniRef50_A2EQF7 Cluster: Putative uncharacterized protein; n=2; ...    40   0.078
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    39   0.14 
UniRef50_Q9WUP4 Cluster: SRD5A2L; n=24; Tetrapoda|Rep: SRD5A2L -...    37   0.41 
UniRef50_Q4PA24 Cluster: Predicted protein; n=1; Ustilago maydis...    33   8.9  

>UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138p -
           Drosophila melanogaster (Fruit fly)
          Length = 95

 Score =  116 bits (280), Expect = 4e-25
 Identities = 50/84 (59%), Positives = 66/84 (78%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           GPKLSLCGL++SVWGI+QL LMG+F+YI +VAL+EDLP +E+   HS+EDF     + Y 
Sbjct: 5   GPKLSLCGLIISVWGIVQLVLMGLFFYINSVALIEDLPLEEEY--HSLEDFYAAANRAYN 62

Query: 181 LNAQNCWIAALLYLITLVVSGHQF 252
            NA NCWIAA +Y++TL++S  QF
Sbjct: 63  QNAYNCWIAACIYVLTLLLSAQQF 86


>UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 88

 Score = 70.9 bits (166), Expect = 3e-11
 Identities = 35/83 (42%), Positives = 55/83 (66%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           GPKLS C  +LS+WG+I L L+GVF+  +++AL+ED+P D+              + G++
Sbjct: 6   GPKLSNCCFILSLWGVIMLLLLGVFFKTKSIALVEDIPKDKG-------------DAGFS 52

Query: 181 LNAQNCWIAALLYLITLVVSGHQ 249
             A+NC+IAA +Y +TL++S HQ
Sbjct: 53  STAKNCFIAAGIYGVTLIISIHQ 75


>UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1;
           Maconellicoccus hirsutus|Rep: Putative ribonuclease -
           Maconellicoccus hirsutus (hibiscus mealybug)
          Length = 72

 Score = 70.9 bits (166), Expect = 3e-11
 Identities = 36/63 (57%), Positives = 42/63 (66%)
 Frame = +1

Query: 64  MGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVSG 243
           MG FY + ++AL EDLP  E+ P  S E F      GY  NA NCWIAA LY+ITL+VSG
Sbjct: 1   MGFFYKVHSLALAEDLPGLEE-PFESHEKFYSVANTGYDQNAYNCWIAACLYVITLLVSG 59

Query: 244 HQF 252
           HQF
Sbjct: 60  HQF 62


>UniRef50_Q28WM7 Cluster: GA10879-PA; n=1; Drosophila
           pseudoobscura|Rep: GA10879-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 94

 Score = 69.3 bits (162), Expect = 8e-11
 Identities = 34/80 (42%), Positives = 50/80 (62%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           GPK S   L +S W +IQLTLMG+F+ + ++AL++DLP       HS+EDF    +  Y 
Sbjct: 4   GPKCSFFCLFISAWAVIQLTLMGIFFLLNSMALIDDLPLTPIF--HSLEDFRTHADVTYQ 61

Query: 181 LNAQNCWIAALLYLITLVVS 240
           + A  C++ ALLYL   ++S
Sbjct: 62  VVAIRCFVTALLYLCFGILS 81


>UniRef50_Q20589 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 95

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 36/78 (46%), Positives = 49/78 (62%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           GPK+S   +V+SVWG+I L L+GVF+YI+AV L  DL F+       +   VI+ +  Y 
Sbjct: 9   GPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK--YN 63

Query: 181 LNAQNCWIAALLYLITLV 234
             A  CWIAA LY +TL+
Sbjct: 64  EKATQCWIAAGLYAVTLI 81


>UniRef50_Q9NDV2 Cluster: Ribonuclease precursor; n=1; Ceratitis
           capitata|Rep: Ribonuclease precursor - Ceratitis
           capitata (Mediterranean fruit fly)
          Length = 138

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +1

Query: 34  SVWGIIQLTLM-GVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNA 189
           SVWGIIQL LM G+F+YI +VAL+EDLP DE+   +S+E+F       Y  NA
Sbjct: 73  SVWGIIQLVLMMGLFFYINSVALIEDLPIDEEF--NSVEEFYTAATSAYNQNA 123


>UniRef50_Q9W286 Cluster: CG11269-PA; n=1; Drosophila
           melanogaster|Rep: CG11269-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 107

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 27/74 (36%), Positives = 43/74 (58%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
           G K  L  L +S WG + L L+G+F+Y++++ LLE LP     P  S E F  + ++ Y 
Sbjct: 4   GRKCCLFCLFMSAWGFLMLNLLGIFFYVQSLMLLESLPLPHHFP--SQEAFKEQADEAYQ 61

Query: 181 LNAQNCWIAALLYL 222
             +  C++AA+ YL
Sbjct: 62  DVSTRCFVAAVFYL 75


>UniRef50_O02142 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 93

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIEVEKGY 177
           GP  +   L L++WG + + ++G  +Y ++V L EDLP + K    S+  D      K Y
Sbjct: 3   GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62

Query: 178 TLNAQNCWIAALLYLITLVVSGHQFC*II 264
             NA NCWIA  +Y+   V+   + C ++
Sbjct: 63  QQNAYNCWIACGVYIGIAVLLSLRACCLV 91


>UniRef50_A2EQF7 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 126

 Score = 39.5 bits (88), Expect = 0.078
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +1

Query: 19  CGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNC 198
           C +V+SVWGI+ L +M + + I     + DL     NP H+ +D           N +  
Sbjct: 17  CYVVISVWGIVMLGIMAILFGIDKAGTIGDL-----NPHHTRKD-----------NTKTL 60

Query: 199 WIAALLYLITLVVSGHQFC 255
           WI  ++Y I  ++S    C
Sbjct: 61  WINVIIYFIVCILSSISLC 79


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 584 KWADDLWQYAGKNWMRKVEDRSLWR 510
           +W DDL + AG  WM+  +DRSLW+
Sbjct: 459 RWTDDLVKVAGSTWMQAAQDRSLWK 483


>UniRef50_Q9WUP4 Cluster: SRD5A2L; n=24; Tetrapoda|Rep: SRD5A2L -
           Mus musculus (Mouse)
          Length = 330

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
 Frame = +1

Query: 46  IIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLI 225
           ++Q     V+Y +  + +L  +P D+KN       +V+    G  L  Q  W   L  ++
Sbjct: 172 VVQYCFGLVYYVLVGLTVLSQVPMDDKNV------YVL----GKNLLIQARWFHILGMVM 221

Query: 226 TLVVSGHQF-C*IIVPQLVCNIEGVVIFAVNSIPL*NCFFFCQKQVAICNYVCN*VVFLS 402
               S HQ+ C +I+  L  N +GVVI   + IP  + F    + V+  NY+   ++++S
Sbjct: 222 FFWSSAHQYKCHVILSNLRRNKKGVVIHCQHRIPFGDWF----EYVSSANYLAELMIYIS 277

Query: 403 I 405
           +
Sbjct: 278 M 278


>UniRef50_Q4PA24 Cluster: Predicted protein; n=1; Ustilago
           maydis|Rep: Predicted protein - Ustilago maydis (Smut
           fungus)
          Length = 374

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +1

Query: 457 SSSSACISPLLDVNLSHIR----HNERSSTFRIQFFPAYCHKSSAHLFKQNF*IILKF 618
           SS+S+ +S LL  NLS +R    HN+R+S+  ++       + S HLF Q+  I  +F
Sbjct: 115 SSASSHVSSLLAANLSELRSVVVHNQRASSLCMEVTNRSVSQISPHLFHQSIWIAGQF 172


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,643,865
Number of Sequences: 1657284
Number of extensions: 12983386
Number of successful extensions: 29807
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29794
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)