Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30696.Seq
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    30   2.0  
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    29   3.5  
12_02_0247 + 16409988-16411367                                         28   6.2  
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595     28   6.2  
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818           28   6.2  
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928...    28   8.1  
03_06_0107 - 31684645-31684710,31685524-31685606,31686284-316863...    28   8.1  

>08_01_0091 +
           664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
           Q+   G FL  G  E+ RS      +    + SA  R GE A+ +D+ +R   +GK    
Sbjct: 20  QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79

Query: 285 PAKGVTVPT 311
              G T PT
Sbjct: 80  SNPGET-PT 87


>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGH*GNSKCEVSRLQKWRT 371
           G+G  K+D++  K+ K K +P P    T P  K    N   + S   + R+
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNEVPQDSPAMRTRS 405


>12_02_0247 + 16409988-16411367
          Length = 459

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 435 TTRRRXLNXXIDRACRSLTLLLFSTFEVLRLHILSFLNAPSGWER 301
           T+++  L    DR  RS+ LL+  T  V  +H L  L APS W R
Sbjct: 330 TSKQLLLTPSRDR--RSVALLVCRTTRV-EIHTLDMLAAPSAWAR 371


>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
          Length = 216

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
           G+G  K+D++  K+ K K +P P    T P  K
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAK 180


>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
          Length = 216

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
           G+G  K+D++  K+ K K +P P    T P  K
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAK 180


>04_04_0752 -
           27791126-27791167,27791792-27791863,27792771-27792855,
           27792971-27793236,27794117-27794301,27794925-27795018,
           27795193-27795284,27795401-27795539,27796101-27796385
          Length = 419

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 277 NPSPLKA*PFPPGRGIKETQNVKSQDFKSGEQQKGKG 387
           NP    A P PP  G K+ +N K   FK   +  G G
Sbjct: 17  NPGLFPANPTPPADGTKKKKNNKKSMFKKTSKAGGGG 53


>03_06_0107 -
           31684645-31684710,31685524-31685606,31686284-31686340,
           31686414-31686470,31686560-31686821
          Length = 174

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 456 RYRRKXGRSSAXHRDASLRSSA*LQRAPQF*RQQPGRCRASRSTKTT 596
           RY R+ GR  A  R   LR     +  P      PG+ R  R TKTT
Sbjct: 17  RYSRRVGREGASGRGMHLRDDTVGREEPHQPGMSPGQGRC-RRTKTT 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,390
Number of Sequences: 37544
Number of extensions: 268253
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)