Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30696.Seq
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 31 1.2
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_3663| Best HMM Match : MBT (HMM E-Value=0) 30 2.1
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07) 29 3.6
SB_19484| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3) 28 8.3
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 28 8.3
SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 136 YGVGVVNRYALFLDDETDPLDALKAREQ 219
Y +GV NR+ L L DE DP K E+
Sbjct: 6 YSIGVNNRFGLLLSDEEDPETTFKESEK 33
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 240 DQRSRKENKGKPEPKPAKGVTVPTRKGH*GNSKCEVSRLQKWRTTE 377
D+ + K P +PAKGVT +R G +S V + K +TT+
Sbjct: 1134 DEAQPGKKKAAPRKRPAKGVTAASRDGD-SDSDASVEVVSKKKTTK 1178
>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
G+ +QK+++ RK N+GKP P +K + + G
Sbjct: 46 GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79
>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
A +KE ++ RK+++GKP+P+ K PTRK
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRK 325
>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
Length = 327
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 207 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPT 311
SA + + ++E++ KE + KP+P+P +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPE-PKPAKGVTVPTRKGH*GNSKCEVS 350
+K+ AGEG Q++D RS E P P+P G T G G + EV+
Sbjct: 1041 IKACDAGEG-QRKDSRSGAEGAAPPPLPRPYTGAGPKTPNGE-GKPEAEVT 1089
>SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)
Length = 1248
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGH*GNSKCEV 347
++ R + + +RS+KENKG P+ + TV RK N+K EV
Sbjct: 748 EAKRKKQRPKSSRRRSQKENKGCPKKESESEHTVEGRKYTLQNAKTEV 795
>SB_19484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = -2
Query: 483 SSFLXFCGTVLRP----IFTTTRRRXLNXXIDRACRSLTLLLFSTFE 355
+ FL FC + P +F T R+ L R C SL TFE
Sbjct: 64 AQFLTFCNSAANPFVYFVFVTRYRQGLKKLCSRPCPSLPAATRHTFE 110
>SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3)
Length = 319
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 225 GAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGH 323
G Q++ S + +G+ EP+PA+ VT T +G+
Sbjct: 258 GNQQQIVDSSRATRGETEPRPAQTVTENTTRGN 290
>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 222 EGAQKEDQRSRKENKGKPEPKPAKG 296
EG KED KE KGK E +G
Sbjct: 875 EGKNKEDNEKEKEKKGKDEKDEKEG 899
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKP 287
+ SA + A++E+ +R+EN P+P+P
Sbjct: 672 LSSAEPSKAAEQEETSTREENSVDPQPEP 700
>SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = -2
Query: 483 SSFLXFCGTVLRP----IFTTTRRRXLNXXIDRACRSLTLLLFSTFE 355
+ FL FC + P +F T R+ L R C SL TFE
Sbjct: 294 AQFLTFCNSAANPFVYFVFVTRYRQGLKKLCSRPCPSLPAATRHTFE 340
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,028,430
Number of Sequences: 59808
Number of extensions: 285235
Number of successful extensions: 714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -