Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30693.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.85 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   2.0  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 182 KKQIWTLEPASGNANDSMIYLR 247
           K   W+L P SGN  ++  YLR
Sbjct: 210 KGSFWSLHPDSGNMFENGCYLR 231


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 586 CSRWSSALTRGGKYALHTCNN--KLLET 663
           CS W    T  G+ A+  CNN  K LE+
Sbjct: 222 CSLWFINCTAKGRVAVWMCNNLHKALES 249


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 586 CSRWSSALTRGGKYALHTCNN--KLLET 663
           CS W    T  G+ A+  CNN  K LE+
Sbjct: 222 CSLWFINCTAKGRVAVWMCNNLHKALES 249


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 283 GNVTCESEEKEPGSKFHISVSDDNSGRWALRNVERGYFLGSSS 411
           GN TC +      + +  S+  +   RW L   ++ +  GS +
Sbjct: 674 GNYTCLASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDA 716


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,700
Number of Sequences: 336
Number of extensions: 2536
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)