Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30693.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.93 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    27   3.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.6  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   8.7  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 27/92 (29%), Positives = 40/92 (43%)
 Frame = -3

Query: 455 SSASPGTLAVQVSLSELEPRK*PRSTLRSAQRPLLSSETLMWNLLPGSFSSDSQVTLPKL 276
           SS S  T + Q S+S         +   S     LSS +++ +    S SS S +T   L
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235

Query: 275 STARYLSSVTSSRSCYHWHSRKQARGSKSVSS 180
           ST+   S+ +SS S     S   +  + S SS
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSS 267


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 238 LLEVTLDKYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWALRNVERGYFL 399
           LLE   +   AVD   N   ES E+ P      S+ ++N G W   NV   Y L
Sbjct: 662 LLESNNNIERAVDWILNHPDESFEEPPLEGSDSSIKNENMGSWESTNVPVNYNL 715


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 356  LLSSETLMWNLLPGSFSSDSQVTLPKLSTARYLSSVTSSRSCYH 225
            L +  + M  +LPGSFS  +   LP L T    S  T+ R+ Y+
Sbjct: 1136 LENGSSAMVEILPGSFSLKTPSWLPNL-TLNLESKSTTLRTIYY 1178


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 316  VPFPLIRKSRYRSCRLLGTCPV*PQVDHAIIGI 218
            +P   I+ +  R+C L+G  PV  +++  I+GI
Sbjct: 1004 IPLLSIKTTAQRNCTLIGFFPVINRLESEILGI 1036


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 683 LGASPXAVSSNLLLQVWSAYLPPLVSAELQREQRVL 576
           +GA+P  ++ + +LQ  S++LP +  A  Q  +R+L
Sbjct: 310 IGATPEYLAGHYILQAASSFLPVMALAP-QPNERIL 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,829
Number of Sequences: 5004
Number of extensions: 43433
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)