Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30693.Seq
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0280 - 16166962-16167393,16167646-16167770,16168305-161686...    29   3.9  
09_02_0304 + 7118372-7118959                                           28   6.9  
01_01_0208 + 1780275-1781123                                           28   6.9  
10_08_0542 - 18642683-18643816,18643952-18644193,18645152-18645386     28   9.1  
05_01_0126 + 858259-858489,858641-859189,859545-860162                 28   9.1  

>03_03_0280 -
           16166962-16167393,16167646-16167770,16168305-16168645,
           16171153-16171313
          Length = 352

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 89  WWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIY 241
           WW     + R RYL+A  FG ++      +    I  LEP  G  +   +Y
Sbjct: 77  WWLSRSPHRRGRYLSANHFGAEVPNLSAKIVGANIGYLEPDRGRPSQFSLY 127


>09_02_0304 + 7118372-7118959
          Length = 195

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 540 DEIHVDAN-VPWGEDTLFTLEFRADEGRQVRAPHLQ 644
           D +H+    V  G  + F   FRAD GR+V+ P+LQ
Sbjct: 52  DNMHLSCYAVQGGGRSEFYHSFRADPGREVQLPYLQ 87


>01_01_0208 + 1780275-1781123
          Length = 282

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 165 LALILKPKVSAVR*RYREFIRPMVHHPFCWFWVRMSPALLMSPLLCPFI 19
           L L L+P    ++   R F++  +H P C+F V   P    SP  CP I
Sbjct: 200 LFLTLRPPPFILQGPIRNFVK--IHVPSCYFPVHGCPRSPSSPTGCPTI 246


>10_08_0542 - 18642683-18643816,18643952-18644193,18645152-18645386
          Length = 536

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = -3

Query: 611 VSAELQREQRVLAPRHVSVHVDLVERLREVSETLGP-IERRFI*XLAA--RWTCQSSASP 441
           VSA L  +  VL    +   V  V R  + S  LG  I+R F   + A  R  C+++ S 
Sbjct: 187 VSAGL--DSLVLGEGQILAQVKQVVRSGQNSGGLGKNIDRMFKDAITAGKRVRCETNISS 244

Query: 440 GTLAVQVSLSELEPRK*PRSTLRSAQRPLLSS 345
           G ++V  +  EL   K P+S   SA+  L+ +
Sbjct: 245 GAVSVSSAAVELALMKLPKSECLSARMLLIGA 276


>05_01_0126 + 858259-858489,858641-859189,859545-860162
          Length = 465

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 453 FGVSGDLGGAGQFVRAGAQEIA 388
           F VS D+GGAG     GA+EI+
Sbjct: 126 FAVSSDIGGAGSDPAGGAREIS 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,321
Number of Sequences: 37544
Number of extensions: 355711
Number of successful extensions: 1189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)