Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30693.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      83   2e-16
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)          29   4.0  
SB_44892| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    29   4.0  
SB_32602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_32382| Best HMM Match : TerB (HMM E-Value=3.7)                      29   5.3  
SB_3042| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_19214| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 40/88 (45%), Positives = 58/88 (65%)
 Frame = +1

Query: 241 LEVTLDKYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWALRNVERGYFLGSSSDKL 420
           L+  L +YL  D  GN+ CE+EE+E  +KF + + D   G+WAL++V   YF G++ D+L
Sbjct: 294 LKSHLGRYLTADPKGNLCCEAEERESNAKFTVEIKD---GKWALKSVHGAYF-GANGDQL 349

Query: 421 TCTAKVPGDAELWHVHLAARXQMNLRSI 504
            C AK+ G  ELW VHLA   Q+NL+S+
Sbjct: 350 KCVAKI-GKTELWTVHLAMHPQINLKSV 376



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 32/55 (58%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +2

Query: 92  WTIGLINSRY-RYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIYLRSH 253
           W IGL+N    +YLTAETFGFK+N++G SL+KKQ W+LE   G A    IYL+SH
Sbjct: 247 WNIGLMNDNSSKYLTAETFGFKLNSDGVSLRKKQTWSLEQVDGEA----IYLKSH 297



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 510 KRFAHLSESLDEIHVDANVPWGEDTLFTLEF 602
           KR+AHL E  +++ V   +PWG D   TL+F
Sbjct: 379 KRYAHLDEEDNDVKVSELIPWGADATITLKF 409


>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
          Length = 301

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 674 SPXAVSS--NLLLQVWSAYLPPLVSAELQREQRVLAPRHVSVHVDLVERLREVSETLG 507
           SP A SS  N L  +  A L   + + L R+ +VLA   ++ +V   E    +SET+G
Sbjct: 57  SPQAASSFVNSLWPLLEAKLDRWIESSLSRKVKVLATEAINKYVTSKEFKESLSETVG 114


>SB_44892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
 Frame = -3

Query: 479 LAARWTCQSSASPGTLA--VQVSLSELEPRK*PRSTLRSAQRPLLSSETLMWNLLPGSFS 306
           LAA   C+ S  P   A   Q  L  +         +     PLL  E +   LL G  S
Sbjct: 503 LAALLACEESLPPDKRAHYAQELLQVIRDTLDLEQPIIIRAEPLLRVEDVQIKLLKGIGS 562

Query: 305 SDSQVTLPKLSTARYLSSVTSSRSCYHWHSRKQARGSKSVSS 180
              Q+T+     +     VT  R  +  H+    RGS + SS
Sbjct: 563 VGEQITVDLTLYSGLHEEVTCRRISFSLHTPDLRRGSSAYSS 604


>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 476 AARWTCQSSASPGTLAVQVSLSELEPRK*PRSTLRSAQRPLLSSETLMWNL-LPGSFSSD 300
           A+R    +S  P +   Q S +       PRST   A RP  S+ T+  +     S ++ 
Sbjct: 542 ASRAATSNSTIPRSTDAQASRAATSNSTIPRSTDAQASRPATSNATIPRSTDAQASRAAT 601

Query: 299 SQVTLPKLSTARYLSSVTSS 240
           S  T+P+ + A+   + TS+
Sbjct: 602 SNSTIPRSTDAQASRAATSN 621


>SB_32602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 746 AASAPRVGYSAVETGTRXCTCLGASPXAVSSNLLLQVW-SAYLPPLVSAELQR-EQRVLA 573
           AA+   VG+SA+ T T   TC    P  +    L QV+ SA L  LV   ++R    V A
Sbjct: 58  AAADGLVGFSAILTHTAQITCTFNGPYKIFCQFLWQVFQSASLFGLVLVAVERMYATVWA 117

Query: 572 PRH 564
            RH
Sbjct: 118 IRH 120


>SB_32382| Best HMM Match : TerB (HMM E-Value=3.7)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 674 SPXAVSS--NLLLQVWSAYLPPLVSAELQREQRVLAPRHVSVHVDLVERLREVSETLG 507
           SP A SS  N L  +  A L   + + L R+  VLA   ++ +V   E    +SET+G
Sbjct: 57  SPQAASSFVNSLWPLLEAKLDRWIESSLSRKVEVLATEAINKYVSSKEFKESLSETVG 114


>SB_3042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 674 SPXAVSS--NLLLQVWSAYLPPLVSAELQREQRVLAPRHVSVHVDLVERLREVSETLG 507
           SP A SS  N L  +  A L   + + L R+  VLA   ++ +V   E    +SET+G
Sbjct: 57  SPQAASSFVNSLWPLLEAKLDRWIESSLSRKVEVLATEAINKYVSSKEFKESLSETVG 114


>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/77 (22%), Positives = 33/77 (42%)
 Frame = +1

Query: 274 DSFGNVTCESEEKEPGSKFHISVSDDNSGRWALRNVERGYFLGSSSDKLTCTAKVPGDAE 453
           D +G+   ++E  E       ++S+D   +    +++  +F G      T    VPGD +
Sbjct: 518 DRYGSTISQTEPSEGNESQSFTLSNDRPSQTPPTSLK--HFPGDERTPPTSLKHVPGDEQ 575

Query: 454 LWHVHLAARXQMNLRSI 504
              V  ++     LRS+
Sbjct: 576 TSQVRFSSEPSSTLRSV 592


>SB_19214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 259 KYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWA 369
           K +AVD+ GNV C+S + +  +K  +++   N+  WA
Sbjct: 305 KLVAVDALGNVMCDSGKYK--TKARVTIPCHNNHAWA 339


>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 294 LRIRGKGTRQQVPHQCLRRQQRPLGAA*RRAW 389
           L+  G+G RQ+ P+  LR+++RP     +R W
Sbjct: 775 LQEEGQGQRQEAPYN-LRKRKRPSSPTHKRRW 805


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,059,489
Number of Sequences: 59808
Number of extensions: 371704
Number of successful extensions: 1274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)