Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30693.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z46812-3|CAA86846.1|  196|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/55 (34%), Positives = 34/55 (61%)
 Frame = -3

Query: 656 SNLLLQVWSAYLPPLVSAELQREQRVLAPRHVSVHVDLVERLREVSETLGPIERR 492
           +N+ +Q  ++Y+ P   A+   E+RVL   +V + ++ +ER+ EV+   G IERR
Sbjct: 193 NNIQMQREASYIRPQEIAQFITEKRVL---NVPLSLEDLERILEVAVLDGTIERR 244


>Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical
           protein F45E6.2 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +1

Query: 265 LAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWALRNVERGYFLGSSSDKLTCTAKVPG 444
           L +DS    T ES+E    S F    SD N+G  +      G     SS  L+C      
Sbjct: 28  LELDSLLYGTDESQESTSSSSF--GFSDQNAGFRSRDGGSLGDSSSDSSPPLSCANFTEN 85

Query: 445 DAELWHVHLAAR 480
           D E+W     +R
Sbjct: 86  DQEMWDFGFQSR 97


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 32   SNGD-INSAGDILTQNQQ----KGWWTIGLINSRYRYLTAETFGFKINANGTS 175
            S GD +++A + LT N       G W  G +NS  R+LT  T+    N NGT+
Sbjct: 982  STGDFLSNAWNSLTSNNSTGGGNGTWISGALNSTGRFLT-NTWNLLGNCNGTA 1033


>Z46812-3|CAA86846.1|  196|Caenorhabditis elegans Hypothetical
           protein ZK675.4 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 391 YFLGSSSDKLTCTAKVPGDAELWHVHLAARXQMNLRSIGPSV 516
           YF+G S+D  T TAK   DAEL    L A    N+++ G ++
Sbjct: 63  YFVGQSND--TTTAKNRADAELTAAMLEALIAANMQTQGVTI 102


>Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical
           protein T16G1.9 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/82 (26%), Positives = 33/82 (40%)
 Frame = -3

Query: 686 CLGASPXAVSSNLLLQVWSAYLPPLVSAELQREQRVLAPRHVSVHVDLVERLREVSETLG 507
           C    P     +LL  V  AY       +      V+A  H+ +  D+V    +V +TLG
Sbjct: 679 CEAMPPSLSYMSLLASVGVAYNSSTDMKKYAFLLPVIAAHHMLLDGDMVSLFEQV-QTLG 737

Query: 506 PIERRFI*XLAARWTCQSSASP 441
            +E +        W   SS+SP
Sbjct: 738 KVEHQLTKYAYGYWKPNSSSSP 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,018
Number of Sequences: 27780
Number of extensions: 260251
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)