Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30693.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.75 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
 Frame = -3

Query: 611 VSAELQREQRVLAPRHVSVHVDLVERLREVSETLGPIERRFI*XLAARWTCQSSASPGTL 432
           V+AEL+ EQR+LA   V  H+D  +  R   + + PI       + AR T   +A P TL
Sbjct: 168 VAAELEDEQRLLA-TVVQAHLDTCDFTR---DKVAPI------LVRARETPNYTACPPTL 217

Query: 431 AVQVSLSELEPRK*PRSTLRSAQR---PLLSSETLMWNLLPG--SFSSDSQVTLPK 279
           A  ++ +  +P    +  L+   +   P +         +PG    + D QVTL K
Sbjct: 218 ACPLNPNP-QPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLK 272


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 748 KRPARPALVTPPLK 707
           KRPA P  V PP K
Sbjct: 109 KRPASPGYVQPPTK 122


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 348 RQQRPLGAA*RRAWLFPGLQ 407
           +++RP G   RRA LF GLQ
Sbjct: 222 QEERPKGINGRRASLFCGLQ 241


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 293  VTLPKLSTARYLSSVTSSRSCYHWHS 216
            V +P  +   Y++S TSS    HW S
Sbjct: 1401 VQVPPSAPVLYVTSSTSSSILLHWKS 1426



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 498  AEVHLXSGG*MDVPKFGVSGDLGGAGQFVRAGAQEIATL 382
            A   L  GG   +   G  G LGGA +   AG     TL
Sbjct: 1698 ATFQLSEGGGGSLAGLGGLGGLGGAAEASAAGLHPNNTL 1736


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 293  VTLPKLSTARYLSSVTSSRSCYHWHS 216
            V +P  +   Y++S TSS    HW S
Sbjct: 1397 VQVPPSAPVLYVTSSTSSSILLHWKS 1422



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 498  AEVHLXSGG*MDVPKFGVSGDLGGAGQFVRAGAQEIATL 382
            A   L  GG   +   G  G LGGA +   AG     TL
Sbjct: 1694 ATFQLSEGGGGSLAGLGGLGGLGGAAEASAAGLHPNNTL 1732


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 348 RQQRPLGAA*RRAWLFPGLQ 407
           +++RP G   RRA LF GLQ
Sbjct: 217 QEERPKGINGRRASLFCGLQ 236


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +2

Query: 128 LTAETFGFKINANGTSLKKKQIW-----TLEPASGNANDSMIYLRS 250
           LT    G  +  NG  +  +  W     T++PA  NA  +  YL+S
Sbjct: 373 LTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCNAGPAKYYLKS 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,436
Number of Sequences: 438
Number of extensions: 2973
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)